Array 1 16166-14809 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHJ01000025.1 Streptococcus thermophilus strain St-5 NODE_25_length_26800_cov_2.94304_ID_5995, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16165 36 100.0 30 .................................... TAGCGCTGTCCAAACTAAGGTGCTATTGGC 16099 36 100.0 31 .................................... CATTGATGAGTATTATTGATAAACTTCTCGA 16032 36 100.0 30 .................................... AATCAACGGCTTGACAAACATCAAGAAGAA 15966 36 100.0 30 .................................... ACTTTTGCCATGTATTATTTCCTCCTTTCC 15900 36 100.0 30 .................................... ATATTCTTGCTTGGTTATCAGGATGGATTG 15834 36 100.0 30 .................................... AGACGTGGTGACTCATGGAATCAACCAACA 15768 36 100.0 30 .................................... TTCATAGTTCCGTCTCGGTTTAATTCTGTA 15702 36 100.0 30 .................................... CTGAGTGTTTAAATATTGCATATGAAGAGA 15636 36 100.0 30 .................................... CGATACAGACCGTTTTAGAACAACACACAC 15570 36 100.0 30 .................................... GCATCCCTTGTTTCAATTTCTCCAATTTCA 15504 36 100.0 30 .................................... TTCTTATCTCCTTTTTTAGTCCATTCCATC 15438 36 100.0 30 .................................... AATTGGTGGATAAAATTGGTAAAGTTGTCT 15372 36 100.0 30 .................................... AGATGGGAATGTCTCTGGATGACCTTGTAA 15306 36 100.0 30 .................................... TCTACGAGGATGAAAAAGGTGAGCTTAAAA 15240 36 100.0 30 .................................... TCTTGACTAATACTTCAGGCTTTACAGCTC 15174 36 100.0 30 .................................... TCAAAGTGCCATCTCGGTTTAATTCGGTAC 15108 36 100.0 30 .................................... TGATTACTATTGAAATTAGTAGTAGAGCAG 15042 36 100.0 30 .................................... ACTGCGAGAGCAGAAATTGGCAATTTTACT 14976 36 100.0 30 .................................... CGGAACTGTAGAAAGTACAGGTCAAGACCT 14910 36 100.0 30 .................................... GTGTTTACTGTTAGAATGACTAACGTGTTA 14844 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGAGTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 47126-46892 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHJ01000004.1 Streptococcus thermophilus strain St-5 NODE_4_length_97909_cov_3.1492_ID_5953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47125 35 91.7 30 -.....AC............................ AAAAAAGCCTTGAAGCTGGTAGCAAGAGAA CT [47117] 47058 36 100.0 29 .................................... TCGTGGTCGCTGGTCGCTGTATTGACGAT 46993 36 100.0 30 .................................... GAAAGAACACAAGGATATCTATGAGAGAGA 46927 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGTGGATGAACTCCACTCACGTGGCTTCAAGGTAGGTTTAGTTTCTGGTGGTTTCCATGAGACAGTTGATAGACTGGCAAAAGAGGCAGGTATTGATTATGTGAAGGCCAATCACCTTGAGGTGATCGATGGTTTCTTAACTGGAAAGGTTTATGGTGTGATTGTTACCAAAGATGTCAAGGTAGCTAAGCTTAAAGATTGGGCAGCGGAAAATGGACTTAAACTCTCTCAAACCATTGCTATGGGTGATGGAGCCAATGATTTGCCTATGATTAAGACAGCCGGCATAGGCATCGCCTTTTGTGCCAAACCAATTGTCCGTGCACAAGCTCCTTATCAGATCACAGAACCAGATTTGTATAAGGTCATTGAGATCTTGGATGAGGTGGAAAAATAGTAGAGATAAAAGAGTCCTTTGGATGATTCCAAGGGACTCTTTGTGTATAAAAAAAACACCGAATCGGTGCCACCTTTTCAAGTTGAATACGGACTAAGCCTTA # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //