Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUM010000004.1 Erwinia amylovora strain LA472 Ea_LA472_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31582-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUM010000004.1 Erwinia amylovora strain LA472 Ea_LA472_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31581 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 31520 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31459 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31398 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31337 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31276 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31215 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31154 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31093 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31032 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 30971 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 30910 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 30849 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 30788 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 30727 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 30666 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30605 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30544 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30483 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30421 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30360 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30299 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30238 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30177 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30116 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30055 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29994 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29933 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29872 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29811 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29750 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29689 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29628 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29567 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29506 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29445 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46110-40621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUM010000004.1 Erwinia amylovora strain LA472 Ea_LA472_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 46109 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 46048 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 45987 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 45926 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 45865 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 45804 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 45743 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 45682 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 45621 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 45560 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 45499 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 45438 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 45377 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 45316 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 45255 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 45194 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 45133 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 45072 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 45011 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 44950 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 44889 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 44828 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 44767 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 44706 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 44645 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 44584 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 44523 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 44462 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 44401 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 44340 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 44279 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 44218 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 44157 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 44096 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 44035 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 43974 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 43913 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 43852 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 43791 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 43730 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 43669 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 43608 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 43547 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 43486 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 43425 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 43364 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 43303 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 43242 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 43181 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 43120 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 43059 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 42998 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 42937 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 42876 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 42815 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 42754 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 42693 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 42632 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 42571 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 42510 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 42449 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 42388 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 42327 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 42266 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 42205 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 42144 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 42083 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 42022 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 41961 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 41900 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 41839 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 41778 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 41717 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 41656 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 41595 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 41534 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 41473 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 41412 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 41351 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 41290 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 41229 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 41168 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 41107 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 41046 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 40985 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 40924 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 40863 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 40771 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 40710 29 100.0 32 ............................. TCATATGCGATTTTCAGCCTTTTAAGACCTTC 40649 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 90 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //