Array 1 19313-20840 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVCT02000042.1 Pseudomonas aeruginosa strain PABL049 NODE_42_length_55323_cov_55.6144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19313 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 19373 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 19433 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 19493 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 19553 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 19613 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 19673 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 19733 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 19793 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 19853 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 19913 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 19973 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 20033 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 20093 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 20153 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 20213 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 20273 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 20333 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 20393 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 20453 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 20513 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 20573 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 20633 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 20693 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 20753 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 20813 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30533-29365 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVCT02000042.1 Pseudomonas aeruginosa strain PABL049 NODE_42_length_55323_cov_55.6144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30532 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 30472 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 30412 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 30352 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 30292 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 30232 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 30172 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 30112 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 30052 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 29992 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 29932 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 29872 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 29812 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 29752 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 29692 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 29632 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 29572 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 29512 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 29452 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 29392 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //