Array 1 200-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHOU010000565.1 Raoultella ornithinolytica strain NRZ-41724 NwRZ-41724_S89_R2_merged_contig_565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 199 28 100.0 32 ............................ CATTTCAGGAAGGGTTTGCTCATGAGCGGAAC 139 28 100.0 32 ............................ GCCAGGATGATTGAACACGGGCGCCTGATAGC 79 28 100.0 33 ............................ ATAAACCCCGATATAAATCGAGCTGGCCAGCAG 18 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================= ================== 4 28 91.1 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTACAGGCAGCTTAGAAATATGAGCCGATGCCGGGTACTGCAGGATTTA # Right flank : C # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10483-10154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHOU010000141.1 Raoultella ornithinolytica strain NRZ-41724 NwRZ-41724_S89_R2_merged_contig_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10482 28 100.0 32 ............................ CTGGTTACGCCACAAAACACAGGCGCGTTGTT 10422 28 100.0 32 ............................ CGGTGACCCCGAACAACACCCTGTTCGCAACT 10362 28 100.0 32 ............................ CAGTACGCCTGCTCCAGAGCGTCAATCGCTAC 10302 28 96.4 32 ...........C................ AGGAAAGCGCGTTGACGTGCTGGTGGATAGAC 10242 28 96.4 32 ...........................G CGTTGAGTTCCGGGAGCCGCGGTTTTGACGTT 10182 28 82.1 0 ......................GT.TTG | T [10157] ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGGCAGCTTAGAAATGTAGAGCCAGCCGGAACCAGCAGCCCGATA # Right flank : CATTAACTTGCGTATTCTAAAATAAACCGTTCATTCACATATGGAATGCAAACTGAGAAATCGGATACGGACGAACACAGCCCTTCGCACGGACCGTCAGCGGGACGGTCCGCTATTTTCGTATTATTAGCCTTTTACTGCTGCAACACTTCAGCAAATTTCGCCAGCCATTGCGGATGGGCGGGCCAGGCAGGGGCGGTGACCAGGTTGCCGTCAACATGCGCCTGATCGATACCGATCTCAGCATAATGCCCGCCGCTGAGCCGTACTTCTGGCGCGCAGGCCGGGTAGGCGCTACAGGTGCGGCCTTTCAGTATTCCGGCGGCGGCCAGAAGCTGCGGGCCGTGGCAAACGGCGGCAATGGGTTTGCGCGCCGCGTCAAACGCCTGAACCAGTTTGAGCACCTCGTCATTCAAGCGCAGATACTCCGGCGCTCGTCCACCGGGGATCAGCAGGGCGTCATAATCCTGTTCTTTTACGGCAGCAAAGTCGGCGTTGAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //