Array 1 24393-27481 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKC01000044.1 Vibrio navarrensis strain VN-0413 NODE_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24393 28 100.0 32 ............................ TCTTTCTTAACTTCTGCGCATCGAGTGTGGAT 24453 28 100.0 32 ............................ AAATTTATTTTGCACCACACTTGCAGTGCGCC 24513 28 100.0 32 ............................ GGAAAGGTTTTGCGCTATGTGATGATAGACCA 24573 28 100.0 32 ............................ TCTTGCTCCGTCTTTGTATATTGCATTCAGGT 24633 28 100.0 32 ............................ CTTGGTTTCCCGCTCCACTTGATGCGCTACGC 24693 28 100.0 32 ............................ TTATCCCAGACAAAGCCGTTCATGTTGAGTAG 24753 28 100.0 32 ............................ TTAGCGCAAACGATGCGCGAGCGTACCTGTTT 24813 28 100.0 32 ............................ CCAAGCAGGTTGAATGGATTGATTGGGCGGTC 24873 28 100.0 32 ............................ TTTGTTGCCCGACACGCCAGTTGAAACCACAC 24933 28 100.0 32 ............................ GAGAACATCGACCTGATGTTGCAGTCTCAGCG 24993 28 100.0 32 ............................ ATTACGGCATCGTTTGGACAAAATGTGCGGAA 25053 28 100.0 32 ............................ TCATCATCCTTACCTTTCATTCCAAGCCCATC 25113 28 100.0 32 ............................ ATTGCTTGAAGCTAGGCGGCAATCCGCCATTA 25173 28 100.0 32 ............................ GGCAACGACTGACGAAGCTGGTTACACAGCGT 25233 28 100.0 32 ............................ GTACATGATTCCTGTCTGCATAGCATTTGCAG 25293 28 100.0 32 ............................ TTTTTCGGTAATCTTATATCGGCCATCGTCTT 25353 28 100.0 32 ............................ TTACGATGCGCGTCATTTACCCATCCAATTTT 25413 28 100.0 32 ............................ TGTTAATGGGTTAAACTGAGCGATACCCATGA 25473 28 100.0 32 ............................ TATTGCTCTGGTTAGTAATCCAAATTGTCTAC 25533 28 100.0 32 ............................ TTTTATCGGGAATCGTGCCTACGTCATTGGAC 25593 28 100.0 32 ............................ TGCCAACTCTCCGACGTAATCCCCTAATGGGT 25653 28 100.0 32 ............................ TTTGATGAAGCGCAAAAAGAGCAAACCGCTAC 25713 28 100.0 32 ............................ AAAAATCCATTTGCGTTATTTAAAAAAATTCA 25773 28 100.0 32 ............................ AAAAATCCATTTGCGTTATTTAAAAAAATTCA 25833 28 100.0 32 ............................ CGTGGTCGGTCGCGGTGACGTTGAGCGTGGAG 25893 28 100.0 32 ............................ TCTCAAACTAACCATCGTAGACAATTGAATTC 25953 28 100.0 32 ............................ TTCAGCACACCAATCGCCTTATGAATGTGTTT 26013 28 100.0 32 ............................ TGTAATTTGCTTTTTACCGTGGAATACACGTA 26073 28 100.0 32 ............................ ATACTGCCCGACTTGTAAAAGTCACAGTGATT 26133 28 100.0 32 ............................ TCCGCTCAGCGCCGCTCCAACAGATTCGAGAG 26193 28 100.0 32 ............................ ATAATGCTAGCTATTGCATTCGCTTATTGCTT 26253 28 100.0 32 ............................ TAATTTTCAACTGGTGATGCCAATGCGAAGTC 26313 28 100.0 32 ............................ CGAACCCAGACCCAACAGACCCAAATCCCGAC 26373 28 100.0 32 ............................ TATAAGTCATCTTATGCAGTCTGGTTTGAAAT 26433 28 100.0 33 ............................ AGCCGAGATGTGAGGCGTAGAGAAAGCATCTTT 26494 28 100.0 32 ............................ GTTCCATAATTTGGGCGTACCACCGATAAGAA 26554 28 100.0 32 ............................ TATTCAAGCTTATGAGCAACTGCAAATACCTG 26614 28 100.0 32 ............................ ATTGAAGCTTACTACAGAAAGTTAAATGTAAT 26674 28 100.0 32 ............................ TTATCCAAGCATACGGCAAACTACCTGAGTAA 26734 28 100.0 32 ............................ GAGAGAGACTAGTTTTGGATAGATTTCTTTTG 26794 28 100.0 32 ............................ TTAATATCAATAGAGACTTCTTTGTTGTCTAT 26854 28 100.0 32 ............................ TGCCGTAAGCTGGAGTCCGTTAGTGCTGGCGT 26914 28 100.0 32 ............................ TTTGACTTGTTGAGTAACCGTTTTTTGCTTTT 26974 28 100.0 32 ............................ CTGTCGCTTTCAACTCAGCATGCTTATCAAAA 27034 28 100.0 32 ............................ ATATCGAGATGTGGCTGGTGTTCTTACTGTCT 27094 28 100.0 32 ............................ AATTATGCGCGCGTCGGGTCAAACCTTCGTCA 27154 28 100.0 32 ............................ CACACCAACAGATGCTGCTAGGGCAATTTCAG 27214 28 100.0 32 ............................ TTGAGCTGACCTACCGCATCGTGTTTATGGCC 27274 28 100.0 32 ............................ TTATCAGGAACGAGTGTTGCCAGCTCGTCGAT 27334 28 100.0 32 ............................ AGTTTGCGCCGGGCTAACTGCGTTTTACCGCT 27394 28 100.0 32 ............................ ATTAGTACAACTCCGACAAAGAATCGGCTAAC 27454 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAGCATCAATTCTAATCTAATCATAGCAATCGAGCATTTTAGATGCCCCCGTACCCCAAGCCGTACCCAGAGCGATTTTTGCTACAATTAAAAACCGTTTAAACCTTTATTTAATGCGCTCTAACATCACACCCGCTTCCATGTGGTGGGTGTAAGGGAACTGGTCAAACAGAGCGAAACGGGTAATGGTGTGGGTTTCGCTCAGAATTTCGAGGTTCTCGAGCAGGGTATCTGGGTTGCACGAAATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCTACATCCATACCTGCGCGTGGAGGGTCGACAAAAATCGTATTACAGTTGTAGCTCTTCAAATCTACGCCCGCATCTTTAAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTGAATTCTTCCGCTGACATACGGATGATCTGCACGTTCCCAATTTTGTTGGCGGCAATGTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75354-75561 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKC01000021.1 Vibrio navarrensis strain VN-0413 NODE_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75354 28 100.0 32 ............................ ACTACCCAGAGCTGTGCTGTAGGTCATTCTCT 75414 28 100.0 32 ............................ GAAGCCAATCAACGTGCGAAGGACGCCGCATT 75474 28 100.0 32 ............................ TTGAAGTGCGACTACCCAAATACGCTGTAGAC 75534 28 89.3 0 .........C..........C......T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGCCCTGCTGCATAGGCAGTCAAGAAA # Left flank : TCATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGGTTTGTTCGCAACCAAACGATTAACAAGAGCTTTTTAGGCTCGAAGAAACGGCGAATTAAACGTAGCATGGTGAGAGCCGAGCTTTCTGGGGCTGAACAACGATTACCAGTCACTAATGAAGAGCGTGTCGTCGATAGCTTCCATCGAATTCCCATGTCTAGCGGCTCCTCAAAGCAGGATTTTATTCTGTTTATTCAAAAGGAATTCGTAGATGAGCGTGCTGAATGTGGCTTTAATAGCTACGGTTTAGCAACCAATCAAGAAAGAAAAGGCACGGTACCTGAGTTACGTTTTTAACCTTTTTTCTAAAGCTCTTTTTTAGAGAAGTAAAAACAAGTGCTTACAGAAGTAAGAAGAAAAAGGGCATTTTGGTGAATTGTGATTTTAAGCACGGGGAATCAGAAGGTTAGAGGCTATATTTTATA # Right flank : TAGGTCAGAAAGAAAGCAACCTACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTTCTCTTGGTGGTTTTTTGTTTAAAAGGCTCCCCATGTATTTAAAAAGACTTGAATCTATTGATGTTAATTTCAATCACTATGAGGTAGGACTTGAACGATATGTTAGGTGTACTTGGGGCCTGAACATGTATAGGCATCATGTGTTTCGTGCAAACCTGCCAGATACATTTGTGTTGGAGATCAATCGAATCAATGAATTTTTGGGTATTGCGGTAGAAACCATTGATTAGCCAATGGGTAAATAGTGAACGGTTGCATATTTCGGAGCATTCCGATCAGTCATTTCCGGAATCGAGCGATCGCAATCACCGAAATACGCAACGGTTACATAAAATATTCCGAACGAGCTACGACAACTGTTCTATCACTCATCAAGGAAAATGTGCTGTGGCAGCATATAAATAGAAAAATTAGAAGCATAGGATATGTTTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCTGCTGCATAGGCAGTCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //