Array 1 27083-26017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEAQ010000046.1 Streptomyces javensis strain DSM 41764 NODE_50_length_27870_cov_23.436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27082 29 100.0 32 ............................. ACGTGGGCGCGCTGGAGGGCGGGGATGCGTGC 27021 29 100.0 32 ............................. GATTTGGGTATCTCGATCCCGCCGCAGCTCAA 26960 29 100.0 32 ............................. TAACAGTTACGCATGTTCACATGATCGAACTT 26899 29 100.0 32 ............................. TACTTCGGGGTGACCGGCACCGCGGAGCTGGA 26838 29 100.0 32 ............................. TTCCCGTTCGGTACGGGGGAGTCCTATGACGA 26777 29 96.6 32 ............................A GGAACGGGCGCAGCGCGACGGACGGTGCCGCC 26716 29 100.0 32 ............................. AGATTCCCCAGCATCGGGTCCTTCATCACCGG 26655 29 100.0 32 ............................. CCGAGGACCTCGTCACCGGGGCCATCATGCAC 26594 29 100.0 32 ............................. GACGGTGCACCGCAGCCGGAGCCGACGGACAG 26533 29 96.6 32 ............................T TTCCGGGGTGTCCTGTGTGACCACACCGTGAC 26472 29 100.0 32 ............................. CGCCCGCGATCGAGCTGGAGTCGGCTTTGCCG 26411 29 100.0 32 ............................. AAGCCGGGGCCGCTGCCCCCAGATGCGAAGCA 26350 29 100.0 32 ............................. GAGTGTGCTCAGGTCCGGCGGACCGGGAGCCC 26289 29 100.0 32 ............................. CAGTTCGCCGAGGCTATCGACGCCGAGCGCCA 26228 29 100.0 32 ............................. GTCTGGGTGCCGTCGGAAGCGGTGGCGGTGCC 26167 29 100.0 32 ............................. GACTACGAGCCGACCCTCCAGGCCGCTCTCCG 26106 29 96.6 32 ...........................T. CCCGCACCCCCACGCCGCTTCCCCGTCCGCCC 26045 28 82.8 0 .............-..GT....G.G.... | C [26023] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCCAGTGCGTCGCCCGCTCATGCCGCAGCCCCCGCTCCCCCTCCGCACCCGGCGCCGATGCATACGCCTCGTCTGCGGCGAGGACGGCATACCTGCTGGCCGACATACTCTGAAACGGCGGAGTGATCTTCCCCAAATCATGCAACCCCGCCCAACAACACACCCACCGCCGCGACGCATCCTCACCCAGTCCCAGCCGCTCAGCGATCAGCCCGCGTGAACGGGTCCCCAGCATCACGTCCCACAGCCGACCGGCGATGGCCGCCGTATCCAGCAGGTGACAGATCAACGGGTAGGGCCTCAGCAGCCCCTTTTCCTTCCCCCACAACCGCGCATCGAGGCAAGTCCCGGCAGGTACTAACGGCATCTCGTCCATGCCGTACGACTACCAGCAGCCACTGACAACCGCCCACCGCGCGATAGATTGGCGCGCATGCACAACAGCTGCTCCTTGAGTCAAGAACACGCAAAACCCCTCTAACATCGCAGGTCGCGAAGG # Right flank : CCTGCTGCGGCCGTGTTCAGCCGGTTCGGCCGATGTGGATGACCACGATGGTGACCGTGGTTTCTGTGATCTCGTAAAGGACCCGGTAGCGGCCGACGTGCATGCGGCGCAGGTCTGGTGAGCCGTACTCCGCGGTGCCCGCCGGTCGGGGTGTGTCGGCGAGCAGGTCGACAGCGTCCATCAGCTGCCGCAGGCCGTCAGGATCGTCCTTGAGAAACCGGGCGGCCGCGTTCACCGCGCCCTCGTCCCAGATGATCGTGTAGGTCAAGAAGCGTGCCCCAGCCCGAGCTGGGCACGCACCTGGTGGGACGTGCGCTGCGAGCAGAGGCAGACCGGATCGGGTGGGGATGAGGAGTGGCCTGTGGCCTGGCAGTTGGCGCCGGGGAATGGTGTAGAAGCCAGCACCGTGGGCGGCGCTGGCTTCTACAACCGTGGACGCGGGCCAACGCGTCCGGTGGGATCCTGAAGCGGTTTCGAGTTGCAACCAGTAGCCGTCAGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5238-5937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEAQ010000014.1 Streptomyces javensis strain DSM 41764 NODE_16_length_42981_cov_18.6111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5238 29 100.0 32 ............................. CGGGCTCGGCGGCGTATGCCGGTGGGCTGGTC 5299 29 100.0 32 ............................. GCGGACAAGGCCGCGCTCAAGAGCATGGCTGG 5360 29 100.0 32 ............................. ACGTTCATGGAGGCCGTGGTCTCCGAGAACGT 5421 29 100.0 32 ............................. GACTGGTCGATCCCCATAAAGGCGTCTGTCAC 5482 29 100.0 32 ............................. CGCGTTCGCCTGCTGCGTGGTGAACACCGGTT 5543 29 100.0 32 ............................. TCCTCACCCGCACCGAACCACACATCGCGCTG 5604 29 100.0 32 ............................. GAGTCGAGCACGGCGGCCGCACTTCTTGATGG 5665 29 100.0 32 ............................. CCCCAGGTGTCAGACCTGCGCGAGTCGGGATC 5726 29 100.0 32 ............................. CAGAAGCTCGAGGCGTCGTGATGGAGACCGCC 5787 29 100.0 32 ............................. GTGGTTGACCCGCCGACGGTCTCGGCGCGGAC 5848 29 100.0 32 ............................. TTCACCACGTGGGACACCGTCGGGCCGGGCGA 5909 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGACATCCAGCGCATTCTCGACCCCCAGCGCGCCGCTGATGTCCAGGAACCAGAAGAACAACTCGTCGACCTGTGGGACCCGGTCTCCGGTCCGATTCCTGGCGGCATCAACTACGCAGCGGACGCACCATGACCACACGAGAGCTCCCATGGCATCCATGATCACAATCGCGGCCTCGGCGGTCCCCGAGCACCTACGCGGGGCGCTGACCCGGTGGCTGCTGGAGGTCACACCCCAGCTGTATGTCGGTACTGTCTCGGCCCGTGTACGCGACGAACTGTGGAGCACGGTCACAGCCTGCACCGCAGACGGTGTCGCCGTGCTCGTCTATCCCGCCGACAACGAGCAGGGCTTCGAATTACGAACCGCAGGCCAACAACGACGGCGACCGATCGACTTCGAGGGACTGACGCTCGTCGCCTTCGGATCTCTCCAACCAGATCCGCTAAGCAATAGTCAAGGAATGGCAAATCGGTTCTAACCGTGCAGGTCGCGAAGG # Right flank : GCACGCGTGGCACTGCATCACATGCGCGCCGGGACGATGGGCGACGAGGACTGGACGTCTAAAACTGACGTTCACACGAGGCGGCGGCTCGAGGAAGGGCCATGACCTACCAGCGCAACCAAGACGACTACGGACCACACAGTCCGGACTACGGGCTCTCCTACGACCCAGACCCTCACGCGAACCCCGAACCCATCGACGATCCGGAATCCTGGGAAAGTGACTTCCATGAACAGGACCCTCACGAGGACCATGCCGAGGCCCAGTGGGAACTGGCCTACCGCAACGGCTGGATCGACCGCGATCAGTTCGCTCGCAGGCACCAGCGTGAGCAAGTCGACCCGGCGCCTGAAGCTCCGGACCCAGGGCCCGTCGTCCGTAGCGCCATCGAGAAGCTGAAGGCCAAACTCGCCAGCGGTGAGGTGAGTGAGGAGGAACGGGCGCAGGAGGAGAAGGTGTTGGCCTCGCTGGAGCGGATGCTCAAGCCAGGCGAGTAGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //