Array 1 67704-59274 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJJ01000013.1 Vibrio cholerae strain 173V1015 NODE_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67703 28 100.0 32 ............................ ATCAAGATTGGTAATAAAATCGAGCTAGATAC 67643 28 100.0 32 ............................ ACAAGGAACGACAAGCGGTAGCGTTAGGTGCT 67583 28 100.0 32 ............................ CCCTGTCAGGCCGCAAAGGAGCAACGATGAAT 67523 28 100.0 32 ............................ TACGCGCCTGCAGAGCACATCACGTTCCGCAG 67463 28 100.0 32 ............................ GCTAGTTGATCAGGCCGCGAGTATCATCTTTC 67403 28 100.0 32 ............................ CATTCCGGTTTCCACTGTGATGACGCATCAAG 67343 28 100.0 32 ............................ AGCAAGAAAAACTCAGCTTGGTTCTGCTGGTT 67283 28 100.0 32 ............................ GCTAACAACGCTGGAAGAAGTAATACCACCAG 67223 28 100.0 32 ............................ TAGTGTTGGCGTACCTGTAAGCCTGTTCTCTG 67163 28 100.0 33 ............................ CTACCGCGCAAAACCGATACAGAGAGTCCCTAT 67102 28 100.0 32 ............................ TATTGGTGCTGCTTGTGAAATGCTTCCTCCAA 67042 28 100.0 32 ............................ TTTCACAGTGTCATTAATTGCCGCTCCTGCGT 66982 28 100.0 32 ............................ GTTCGACGCGCGAGCCCCCGCGAAGCCAGAGT 66922 28 100.0 32 ............................ TAAGTCTGGGCGGCCTCCGATTGTTGTTGTTA 66862 28 100.0 32 ............................ CACACAAAAGAGAGTACGACAGAAGGCGTTAT 66802 28 100.0 32 ............................ TGGAAGTTTGAATGGGCAATTGAAAATGACAG 66742 28 100.0 32 ............................ ACGCGCCAGAATATTTGTGTACGTTGTCGCAC 66682 28 100.0 32 ............................ CACAAAGGTGCGATTGATTGTCAGGCCATTGC 66622 28 100.0 32 ............................ TCATAAAAATATTCGTAATACTTGCCAGCCAT 66562 28 100.0 32 ............................ CATAAAAATTGTCACGCTCGGCTTTCGCTGCT 66502 28 100.0 32 ............................ CGCAATCAACCAGAGCAGCTGCGCCGATTTTT 66442 28 100.0 32 ............................ AGCAGGTGACGCCATTCTCTTTTCTTATCCAG 66382 28 100.0 32 ............................ AGCACGAACTTGACGCCGAAGATTTCTACCTT 66322 28 100.0 32 ............................ TTCCGAGCCTAATTGTCGGGGTTTTACACCTG 66262 28 100.0 32 ............................ ACTTATGGTTTGAGAGGCTGTACCGATAGAAG 66202 28 100.0 32 ............................ GCAAAAACGGAAGCCAAATTCCAACAAATGGC 66142 28 100.0 32 ............................ AAGGGCTTGGCCTTCGATCACCACTTGACCAA 66082 28 100.0 32 ............................ CGCAAGCTAAAAGGCTTTGTCACAAGCCCGCT 66022 28 100.0 32 ............................ ATTGAGCCTTTACTGCTTCTTCAATCAGCTTG 65962 28 100.0 32 ............................ GTGAAGTCGGCGTGCTGTGCCAACTGCCCGCC 65902 28 100.0 32 ............................ GAGCTGAAAAACAGCTTAGGCCGTGAAGTCGG 65842 28 100.0 32 ............................ GTTATGGAGCAGAAGTACAACGCTCGCTTGAA 65782 28 100.0 32 ............................ GTCAGCGAGTAGCGTTACCGTCTTTGTCATCT 65722 28 100.0 32 ............................ TGCAGGTATTGACTCAGCACGGCACAGCGCAA 65662 28 100.0 32 ............................ TTACTGCAAACCAGAACAACAGCCGTGTTTCT 65602 28 100.0 32 ............................ ATTTTTTGGCAAGTTTGTTTAATAAATGACCT 65542 28 100.0 32 ............................ TATGGGGAGGCTTCCTTGCCCCTTGCTTAGCA 65482 28 100.0 32 ............................ TTTCCCGTGATTCTTTCCATGTTAACCGCAGC 65422 28 100.0 32 ............................ ATGAAGATGACTACTTCTAACCAAACCCGCTT 65362 28 100.0 32 ............................ AGCGGATGTGGGCGGCATCAAAATAGGTCGAA 65302 28 100.0 32 ............................ AAGAATGGCAGACAGCGCTTTTAGCTCTGGCT 65242 28 100.0 32 ............................ TTGCTTCAGGCGGAGCAGCGGCAACGCCAGCG 65182 28 100.0 33 ............................ CGCAACCAGCTTCAAGTAATCCACGCCCTCCTT 65121 28 100.0 32 ............................ TCGCAAAACCTCGCGGGTAAAATCTCCAACGA 65061 28 100.0 32 ............................ GGTACGGCATGACCGCCTTTGGTGCGGCAAGT 65001 28 100.0 32 ............................ CGCTGGCGTTCGGCGGTAACAGTGAATTACTC 64941 28 100.0 32 ............................ ATCCAGAATGACATAGCCACGCAGCTTATCGG 64881 28 100.0 32 ............................ GTGAGCTGTTCGGCAGTCGCCGCTGTGAAGTG 64821 28 100.0 32 ............................ TTCTGACTCAAATCGCGATAGCCTTTTATCTT 64761 28 100.0 32 ............................ TCAACCGGTTACGGAACTGGTAAGGTTGATTA 64701 28 100.0 32 ............................ TTTTAGGGTTCGCGTGTAAACTTCATCCTTTC 64641 28 100.0 32 ............................ AGAAGTTAGCGGAAAAATACCAGAAGTGGGTA 64581 28 100.0 32 ............................ TTCTACAGCTCCATGACGCAAAACGGCATCTA 64521 28 100.0 32 ............................ AAACAGCTCATCACTTGGCACTAGGCCTTCGA 64461 28 100.0 32 ............................ CCTCCGTGGCAGGTTTGCCGTTTGGCGTTTAC 64401 28 100.0 32 ............................ TTCTCTGAGCATCTTCGATCTGCTCATTAATC 64341 28 100.0 32 ............................ AGTCCTACGGTTCACGTAGAGGGCTCCATCGA 64281 28 100.0 32 ............................ TCAGGTAAACCAATGACACAAGCCCAGTTCGA 64221 28 100.0 32 ............................ GTGAGTGTTGCCCACGCCGTTGGTCACTAAAC 64161 28 100.0 32 ............................ AAAACACCCCGCAATGCGAGGTGTTTGTAGTG 64101 28 100.0 32 ............................ TTAAAGCCAGAAGCGAAATAGACCACAAAGGT 64041 28 100.0 32 ............................ TCAACCTAGCGGGTAACCTCGCGGCCAAAGCC 63981 28 100.0 32 ............................ TTACCCAAGCTGTCAATGACAAGCCCGTAGGC 63921 28 100.0 32 ............................ TAGCCCGAATCCAGACCCAACGCCCGGTGACA 63861 28 100.0 32 ............................ ACCCTCGGCTCTAGCTTTGTTGGGCATCATGC 63801 28 100.0 32 ............................ ATCGCAAGGGATTGCTTTTGATGAAACAAGAT 63741 28 100.0 32 ............................ ATGAATAAGCACTATGAGAATAATTAACAAGA 63681 28 100.0 32 ............................ CACAGCCACAACAACAAGAACAGGCCGAACCC 63621 28 100.0 32 ............................ AGCGTCAACAAAATCCGGAGCCGGACACGCTT 63561 28 100.0 32 ............................ GGTAAGCTCGCTTTGCATCTTGGCAAGTATCT 63501 28 100.0 32 ............................ TGAAAATGCGTAGCTGTGGAGCCATCAATATA 63441 28 100.0 32 ............................ GCAATCCCGCCGCATGATGCGCTGTGGTGAAA 63381 28 100.0 32 ............................ GTAAATTCTTCGCGCTTTTAAATCTTGCTTTC 63321 28 100.0 32 ............................ GCTGTCGAAAATGCGGAGAGTGTGTTGATGAA 63261 28 100.0 32 ............................ TGTTGGAGCAAAAGTTAAATACTTTCCAATTC 63201 28 100.0 32 ............................ TGTCAGAGTACAAGGCAAAGGCGCTTGATCTT 63141 28 100.0 32 ............................ TTAGCAAATATGATTTCTGCAACACCTTTCAT 63081 28 100.0 32 ............................ ACACAAGAGCCACGGCGTACACATTGATTATC 63021 28 100.0 32 ............................ GCCTTGGGATACCTGACCTTACATCAGCCCCC 62961 28 100.0 32 ............................ TCACTATGGGCGTCATAGCTTAACACCAATGC 62901 28 100.0 32 ............................ TAGCCACGCATGCGCTACGCGCCTGCCCTTAT 62841 28 100.0 32 ............................ TTTGAACTAAGTTGACGGTATTCCCATTCTGT 62781 28 100.0 32 ............................ TACTGCGCAGATAAAGACGCAACCGGAACCTT 62721 28 100.0 32 ............................ GTCCAGCGAAGAGTAACCGATGCGGCAGATTC 62661 28 100.0 32 ............................ ATGTTGACAGTTAAATTACCAAGAGATTTTGC 62601 28 100.0 32 ............................ CAAAGGCAACCCAGACGAAGGCAAAGGCGGAA 62541 28 100.0 32 ............................ ATAATGAGCGTTACTGCGCCGTCGATTTTGTT 62481 28 100.0 32 ............................ ATCTGTTTGGCTATGTCATCCCTGATCGCTTG 62421 28 100.0 32 ............................ GAAACCGTTCACAGTGGTTAATTGTGGGCGAC 62361 28 100.0 32 ............................ ACATAAAGACCGATGGGTGAAAGGGGCGGCTT 62301 28 100.0 32 ............................ TGAAGAGAAAGAGAAGGAAGAAGAAAAGTACC 62241 28 100.0 32 ............................ AAGCAAACAGACCTGCAAAAAGAACGTTAGAT 62181 28 100.0 32 ............................ GAAGTGGACACTGAGAATCATCATTAAGAAAC 62121 28 100.0 32 ............................ CTGCATAATGACTTTCGCACTTATCAAAGCCA 62061 28 100.0 32 ............................ TGGCGGAGGGTCGTTACGATGCGTGAGTCAGG 62001 28 100.0 32 ............................ TCATCGATATGATTGACGGTTAAACGGTCAAC 61941 28 100.0 32 ............................ TGTACTGTCGCGTTCGGTGCCCAGTGTTAGGT 61881 28 100.0 32 ............................ ATGACGCAGTGCTGAGCGACGCTATACGGCTC 61821 28 100.0 32 ............................ GAAAGTATTATTTTTGACCACACAGACGCTAG 61761 28 100.0 32 ............................ GTTTGGCGATGGGTGTGACAGCCCTTTAAATA 61701 28 100.0 32 ............................ ACGCCTGCCAGCCTAACACCGCCTGCAACCAC 61641 28 100.0 32 ............................ TAACAAAGCTGCCACCATCGGTGGAAACGTCA 61581 28 100.0 32 ............................ CATAATAAGCGGCTGGCAAAACGCCAACTCTC 61521 28 100.0 32 ............................ GCACTGATTAGACGCGAAGGAAAGAAACCAAA 61461 28 100.0 32 ............................ ATCACAAGCCGAGTTTTCATTGTGTTCTAAGG 61401 28 100.0 32 ............................ GTTCAAAAATGGTGATTTAGTTAATGAATCTG 61341 28 100.0 32 ............................ TTAATCGCGTCTTCCTTGCTTGAAAACGATCC 61281 28 100.0 32 ............................ GTGATGCGCTTCACAAAATTAAAAACCCGCAC 61221 28 100.0 32 ............................ TAGATGGACTCTAGACATCAGAAATACACCTA 61161 28 100.0 32 ............................ AAAAATCCATCATCCCAGTACATGCCTACAGA 61101 28 100.0 32 ............................ TACAGGATTATTTAATCAAATTTATCAACGAT 61041 28 100.0 32 ............................ TGCTGCTTTCGCTGCTGCTTCTCGATTACCGC 60981 28 100.0 32 ............................ CGACAAGGGTAAGCCAGACGAAAAAGGGCAAA 60921 28 100.0 32 ............................ TGAACATGGCCTCAACCGAAGCCGTAGTTTCT 60861 28 100.0 32 ............................ AACTGGTTCCTTGCTATTCCTTTCCAACTAAG 60801 28 100.0 32 ............................ CCTTGGTGGTCGCCCAACCAGTTAAGGCGGTT 60741 28 100.0 32 ............................ GCTTGGGGTTGTTATGATCGCATCCGGTCGAT 60681 28 100.0 32 ............................ CACAAGGCGTGTTTAACCGTGCGGTTAAATCG 60621 28 100.0 32 ............................ GGTAGTTACGACATCAGGGATATTATCACACG 60561 28 100.0 32 ............................ AAGTGCAGCAAACCTTCGACCAACTGGCCGCA 60501 28 100.0 32 ............................ TTACGCCTTAACGAACGCGTCAACGCGTAACG 60441 28 100.0 32 ............................ ATTAATCGGCCCATTCTCCTGCTTAATTACAG 60381 28 100.0 32 ............................ AATGGGAGAACAGAGTAAGAGGCGACCACATA 60321 28 100.0 32 ............................ TTGGGCGCTAGACCTTAACTCTTCCCCTTGGT 60261 28 100.0 32 ............................ GAAAGCGCCAGTAATTTGCCTGCTGTGTTTCG 60201 28 100.0 32 ............................ GGTAACGATTGAAGTTCCAGGAGACAGCTCGC 60141 28 100.0 32 ............................ AAATGGGCGGGCAGCGTTTGGCTTGTAGTCCT 60081 28 100.0 32 ............................ ATCAGAAACTGTTGTTCCTGCTGTGGCGACTA 60021 28 100.0 32 ............................ TTGGTCTAACTTTTCGATTTGCGGACACTCAG 59961 28 100.0 32 ............................ GTCGAATGATTAATCCCGGCTGTTTTACTCCG 59901 28 100.0 32 ............................ ATACATACTTATCATTGTCGTTGCGAAAAGAG 59841 28 100.0 32 ............................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 59781 28 100.0 32 ............................ TCATATTCATCAAAATGCGCTATTGTGCAGCG 59721 28 100.0 32 ............................ TTGATTCCCTCGTATTCACTTTCGGTTATACC 59661 28 100.0 32 ............................ GTATTGAAAGCGGAATGGCTACTCTGACAGCT 59601 28 96.4 32 ...........T................ TGGCATAAGGTGAGGTAATTTTCCAAGTGATT 59541 28 96.4 32 ...........T................ TGAACGGATACGCTCGTTGTTTCAGTATTTAC 59481 28 96.4 32 ...........T................ TTCCCAGCCCACAGCGAGCTCGCAAATCATTG 59421 28 96.4 32 ...........T................ AAGGGTTTAGACTTGGTATCAGTGTATAAATC 59361 28 96.4 32 ...........T................ AGCTTAAACAGTACGTTTTTGCCTTTGACGTT 59301 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 141 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAGTGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCTAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //