Array 1 113565-112737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFP010000012.1 Leuconostoc gelidum subsp. gelidum strain PB4d NODE_1_length_113504_cov_148.007751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 113564 36 100.0 30 .................................... AGTATAACGGTAGCTCCGTGATAATCTCAT 113498 36 100.0 30 .................................... AATTATATTAAACTTACTAAGTTTCATACA 113432 36 100.0 30 .................................... TTTAAACCGCGAACTTCTAGCAAAGCACTG 113366 36 100.0 30 .................................... CACGGCTAAAGCCAACAGTGACGCTAGTAT 113300 36 100.0 30 .................................... CTACGTACGTAAGGATAAGGACTCAGATAG 113234 36 100.0 30 .................................... TAGTAGCCAACAGTTCTATTACCAACTTGA 113168 36 100.0 30 .................................... ACTCAACTGGCTTTGAGCCATCAATCACGT 113102 36 100.0 30 .................................... GATCACGTATTGTGCTTCTTCGATTGAATA 113036 36 100.0 30 .................................... TAATACATTAGGTCAAGTGTATAAGTCTAC 112970 36 100.0 30 .................................... GCAAACGGATTGGACTTCAAGGCAAATTGC 112904 36 100.0 30 .................................... TCTAACATCTTCAACGTTTTCATTGAGCAT 112838 36 97.2 30 ...................................T CATTGGTCGCATCAGCAAGAACACCATTCG 112772 36 94.4 0 ..............................C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.4 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : | # Right flank : TTATATACATGGCAATCTATATTGAAATTAAATACCATATTAATAAGATTAAAGCGCTTAGGCGCTTTTTATATGCCATACATGTCAAAAAAGAAGTTTACGCGAATAACGATTATGGTATGATATATTATGTTATAAATAATCACGTCAAACGTGAGATGGAGAAAGGGAGATTTTCCTGTTTTGGTAAATAAAAAATTGCAAGTGAAAGAATTACTTGTTTCAACAATAATTATTGGTGGCGTTCTGGGCACGATGTCTACGGTTAATGCTGCTGAAAATACAGCACATGTATCGACACAAGTGTCAAGTACAACCGTATCAGGTTCGAGTGCTGTATCACAAGCGCCAAGCACTAAGGCATCAAGTTCAACAATAAATGAGTCTAAAAAAAATGATAGTTATAATGTAACGCCGTCAACTCGATCTATTCAAATATCTCCAGCCAAATTTAAAACCGGTTCTGTAATCGCATTGACTAATTCAGCAAAAACGTCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8007-9428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFP010000010.1 Leuconostoc gelidum subsp. gelidum strain PB4d NODE_42_length_9391_cov_149.109787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8007 36 100.0 30 .................................... ACGAACTCCGTCAACAGCTGTAATTTGTCC 8073 36 100.0 30 .................................... GAAAGCAGACCAGTACATGACACTGCTAAT 8139 36 100.0 30 .................................... TGATACAACTTGTAAACCGTCATCACGTTT 8205 36 100.0 30 .................................... TTCTAATGATAATAATAAACCTGCGGACGA 8271 36 100.0 30 .................................... TATACCGCCCAAAACATTGACACTAGCACC 8337 36 100.0 30 .................................... AGATACTACAATGTATGATGTTGTTCCCTT 8403 36 100.0 30 .................................... TAATCGTGTATGTTGTATCTGCTTTCAATT 8469 36 100.0 30 .................................... CTACTTATCTGTGTTTGCTCTAAGTCACAC 8535 36 100.0 30 .................................... GAAGAGGAACTAATGCGTGAATACTTGGCA 8601 36 100.0 30 .................................... TACCGTCACTTGTGTTTCGTGTTCGTTTAT 8667 36 100.0 30 .................................... AGACCAGTATAATGCTGTGCTAACTCTGCA 8733 36 100.0 30 .................................... GCTACTTTACGAATTTGCAATGGGTCTACT 8799 36 100.0 30 .................................... CTGATTCACTTACTCGAATACCTGAGCGTG 8865 36 100.0 30 .................................... TACTGAAATATAGATTTCCATAACCGTCAG 8931 36 100.0 30 .................................... ATACGCCGGTTCAATTGAATAACTACATCT 8997 36 100.0 30 .................................... AAAGGGTGGTGGTTATGTGAGTAGAAACAT 9063 36 100.0 30 .................................... CAAAGGTCAAACCACTCATCACACCGCTAA 9129 36 100.0 30 .................................... TATTGATTTTAGTTCCATATTTGCTGGTTT 9195 36 100.0 30 .................................... ATTACTTTATGAGTTTGCAATGGGTCTACT 9261 36 100.0 30 .................................... AATACAGATGAGTTATATAGGTTATTTAGT 9327 36 100.0 30 .................................... TAAAACATATTATCTTGAGCAGTACATTGT 9393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : GGTGCGCAACTTGATGTGAATAAGTTGTATCAAAAAAATATCGTTAATACAATGAAAAATTATGCAGATGATCAAGCGTTAGAAGTGTTTTATAAAATAAATTCCGAATTAAATCATGTCTTAGAAAACATTATATTAGAGAACAATCTGCCCTTTTATTTTCAAACAGAATTCAATATTGTCGAATTAATAAATGAGAAAAAAATTAGGATAGAAACACTGACAAACAGCTCTGGATTTGGTAAAATAGAAGATGTAGTAAGCGTTGCTGGTGAGTTTTCAGAGCAACGTTTAATCGTTTTTACGAATTTGTATTTGTTGTTATCGGTTGATCAGATTGACTATCTGAATAATCTAGCGAAGACAATGAATTTATGTTTAATTTCTCTTAATTTGACACAAAACCCTGTTATGACTAAACAGGGTCTACCTCCAGAAATCTTTATTGATGAGGATTTCGTTCAATTTGGTGCTGACTAGCTGATGCGAACAGGCGGTCT # Right flank : AGAAATAAGCAATCTGTCCTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //