Array 1 242649-246829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTOE010000003.1 Bifidobacterium longum subsp. longum strain VKPM Ac-1635 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 242649 29 100.0 32 ............................. GTCGGCATGACCGTCGCCACATTTCATCGCAA 242710 29 100.0 32 ............................. GACGAGGATCTGGCGTTGCTGCGCTCGGTCCG 242771 29 100.0 32 ............................. ACCCTGCCCGCCGGCACCAACGTCGTCGCCGT 242832 29 100.0 32 ............................. TATTCGACCTGCAGTGGATGCTCTTCGAACCG 242893 29 100.0 32 ............................. GATTTTCTGGCATCGGCGACGGCCAGCCAGGA 242954 29 100.0 32 ............................. TTCGCCGCCGCCTGACCATGAGCGACACCGAA 243015 29 100.0 32 ............................. TGCTGCCAGGCGTTGGTGCTGGTCGCGGCGTC 243076 29 100.0 32 ............................. TTTGATTTCGGCCATCCGAGTGCGGATGGTAT 243137 29 100.0 32 ............................. ACCGGCCGACTGGTCGGCAACCTGAACGCGAA 243198 29 100.0 32 ............................. CAATCGGCATGGCGGAACAGACTCTTTCAAAC 243259 29 100.0 32 ............................. GGTTCGTCACCCGCGAGGGCATACCCGGACAC 243320 29 100.0 32 ............................. GTTCTCTCGGCGGCCAACAAGTGTGTGCCCAT 243381 29 100.0 32 ............................. TCGATGCTGGAACGACTGCCAAACGTCCAACT 243442 29 100.0 32 ............................. GATGAAATGAAAAGCAAGAAACAGAGAAGAAT 243503 29 100.0 32 ............................. TGGACGGCAACCACGACACCGACATGCTCAGG 243564 29 100.0 32 ............................. GTCTCAGCCAGGCCGAACTCGCCATCCGGGCC 243625 29 100.0 32 ............................. GTCCAACGCGTTCGAAAGCACCTCGGCCTTGC 243686 29 100.0 32 ............................. GTGCGGTCGAGCCTTTGTCCCGTTTCCCCGAG 243747 29 100.0 32 ............................. ACGCCGGCCCCGAACCGGAAGAGCGGGTCCCC 243808 29 100.0 32 ............................. ACCTCCATCATCCTTGGACAGCTGTTCGACCC 243869 29 100.0 32 ............................. CAGGTCAAGGCCGCCGACGAGGCCATCGCCGA 243930 29 100.0 32 ............................. GCCGCCGCCGAGAAGGAGCTGGCCGCGGCCAA 243991 29 100.0 32 ............................. GCGCTTGAAGCCAAGCGGAAGGCCGACGCCAG 244052 29 100.0 32 ............................. GGGCAGCCCCGCGATGCTGGTCTCCAGAATCT 244113 29 100.0 32 ............................. GGGCCGCCCGCCTACGACGCCATCATGCTCGT 244174 29 100.0 32 ............................. AGCCTCGGCATCAGCGGCACGACCGCCAAGGA 244235 29 100.0 32 ............................. AACATGGGCGGCTCCATCGCCGGCTATTCCGC 244296 29 100.0 32 ............................. GCGGCGAAGACATGACATTGATACTGCCTCCC 244357 29 100.0 32 ............................. TCGCGGCTTATCGACTTCCACGACGCCTGGAT 244418 29 100.0 32 ............................. GAAGGAACACACTATGGAGACGACGAAGCGTT 244479 29 100.0 32 ............................. GGCGCGCAACGACATGTACCGGCAGCTGGTGC 244540 29 100.0 32 ............................. GGCAGCGAGTCGCCTTCCTTCGCCTGCTTGGC 244601 29 100.0 32 ............................. CCGCTCAGCCCTACTCTCGCAAGGCAAAACGG 244662 29 100.0 32 ............................. GGACTGGTTCAGCGAGTTGGCCGTGATTGCAT 244723 29 100.0 32 ............................. AACGCAACCAAAGAACCTAAACGCTCCAATCG 244784 29 100.0 32 ............................. AGACGGATAAAACAGAGGGCAACAGAGATGAT 244845 29 100.0 32 ............................. AGACGGATAAAACAGAGGGCAACAGAGATGAT 244906 29 100.0 32 ............................. TGCCCTTGTTTTTCTGTTCCTCCGCCGTTCTG 244967 29 100.0 32 ............................. TGCCTATCGCGTCGGGAGATTACGGTTTGAAA 245028 29 100.0 32 ............................. TGGCCGCAGAACTCGCCAAACGACTCAACGAC 245089 29 96.6 33 ............................A GACGCGGCATGCTTTTCGCGTCTTCCCGTGGGA 245151 29 100.0 32 ............................. GAGCTTTCGACCGTGCCTATCACATAGAGCGC 245212 29 100.0 32 ............................. GTTCGCCACGCTTCCACCCAGTCGGAGGCGGA 245273 29 100.0 32 ............................. GATGCCTGAGCATCGAGAACACCGCGTCATCG 245334 29 100.0 32 ............................. ACCAAGGTCGAATACGCGGACCTCGTGGAAGT 245395 29 100.0 32 ............................. ACCAAGGTCGAATACGCGGACCTCGTGGAAGT 245456 29 100.0 32 ............................. GCGTCCTGTACCACGCGGTCACAATCGGGGTT 245517 29 100.0 32 ............................. GTATGTCACAACGGCGGCAGCAACACCGCAAC 245578 29 100.0 32 ............................. TGATGAGGAATGCGGCACGTTCAACGCGCCTG 245639 29 100.0 32 ............................. AAGCGCCCGACATGGCATATCATGGGGTACTT 245700 29 100.0 32 ............................. TTATGGCGCCCAGTGCTGGGACTTGTGGGCGA 245761 29 100.0 32 ............................. GTTCCGGGCCGTCTTCGCGGCATGGGCCCCAT 245822 29 100.0 32 ............................. ATTATATCATCGGATACGATTCATTGGACCCC 245883 29 100.0 32 ............................. GACGCTGTCCGCTAGATCGGGGCTTCCGGTCT 245944 29 100.0 32 ............................. GAACCGACGAAGAATTCACCGAACGCTATCGT 246005 29 100.0 32 ............................. TGGCGAAGATGTGGGGCAACGCCTTCTGCTCC 246066 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 246127 29 100.0 32 ............................. GTGCATCTTGATAGCATCCCGTCCGACGAAAC 246188 29 100.0 32 ............................. AACAATGGTTCGACAAACTGGATGGAGTGGAA 246249 29 96.6 32 ............................T GACCGGAATGTCAATCAGGAACTTGTCAGTAG 246310 29 100.0 32 ............................. TGCCCACGGATGTTGAACGTGCCCCATACACC 246371 29 100.0 32 ............................. CGGACAACTGACCGATGCTCCGAAGCCGCCCC 246432 29 100.0 32 ............................. TGCTGACGCTGATTAACTCCACTTACGGTACC 246493 29 100.0 32 ............................. ACTGTCGGTATCACCGCCCGTGACGGTAACGC 246554 29 100.0 32 ............................. GACGTGATGAAGGCGCTCGTGGCCCTCAAGGA 246615 29 100.0 32 ............................. GAGAATCTCTACTGGGGTAGCACAGTTCAGGA 246676 29 100.0 35 ............................. AAAAAAGAACCGCCGAAACCCTCAACAAGCTGCAG 246740 29 100.0 32 ............................. CCAGAGTGCGCGCATTCGTAGGACGTTCCCCT 246801 29 89.7 0 C..........C.........C....... | ========== ====== ====== ====== ============================= =================================== ================== 69 29 99.8 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : CCGGCCGCAAGCACGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-3141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTOE010000010.1 Bifidobacterium longum subsp. longum strain VKPM Ac-1635 sequence10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 55 29 100.0 32 ............................. CAACCGAAGGCATCGGATACGTCAACCCCGAC 116 29 100.0 32 ............................. CACTACACGCCGGGCCGCGCCGGCCACCGCAT 177 29 100.0 32 ............................. ATCGCGTGCCATCTGCGACAGTTGGCACCGCC 238 29 100.0 32 ............................. CTCTGCAAAATGTTCGATGGACGTAAGGCGCT 299 29 100.0 32 ............................. AGGGAAGTTGTAGCGGCTTGTAGTAGGCGAGA 360 29 100.0 32 ............................. TACGCCAATTGCCTGACCATCGCGCAACGTCT 421 29 100.0 32 ............................. CGGTTTCAACGTGTTTTCTATAAACGCGCGTT 482 29 100.0 32 ............................. CTCGCCCATAACGACGGCACCGTTCGCACCGG 543 29 100.0 32 ............................. GTTGCCGATGGCGTCCACAGCCATACCGATAC 604 29 96.6 32 ............................A CCTATGGTCGATCAGATCACCCAAATGCTTGA 665 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 726 29 100.0 32 ............................. GCGGCTATGGGTATCGCCGGCATCGGCGGTAA 787 29 100.0 32 ............................. GTGCGAACCATTGTTTTTGATGAGATTTTTCC 848 29 100.0 32 ............................. TGGCCACGGATGTTGAACACGCCCCACACACC 909 29 100.0 32 ............................. ACCATCGCGCCGAGTTGAACGAGAAAATCGTC 970 29 100.0 32 ............................. TTCTGAAGCTGGGAGCCCACCAGCGTGGCGAA 1031 29 100.0 32 ............................. ACGGACGCACCACCGTCATACCCAAGGTCGAC 1092 29 100.0 32 ............................. AGTCGCCGTGGATTTAAATTCTTTGACCTCGA 1153 29 100.0 32 ............................. AGGTGAGTATGGACGACACCGAAAACAATGAG 1214 29 100.0 32 ............................. ATGATATTATCTCCGAGGAAAAATAATCACTA 1275 29 100.0 32 ............................. CGGGGTTGGCGAGCGTCTTGTTGAGGAACGTG 1336 29 100.0 32 ............................. GAAAACCCTCTCGAAATCTAGTTGTTCCCGTT 1397 29 100.0 32 ............................. CGTCCTCCTTTCCATTTCTCTGGTGGGATTGG 1458 29 100.0 32 ............................. ACGACCGGCTGGTGGCATCACGCGCTGGTGCG 1519 29 100.0 32 ............................. TATCTCCCGTTCAAGTTTCCTCCTGCCCCCTT 1580 29 100.0 32 ............................. CGCCTCAACGTGCGTATCCTGCCCGCCGCCGC 1641 29 100.0 32 ............................. ATACGGTCGGGGTCGGAGTCGGTGTCCTGCTC 1702 29 100.0 32 ............................. TCGTTGTCTGAAAGAATCGAATCCAAACCCAA 1763 29 100.0 32 ............................. GCGGGTGCGGCTGTCATCACGCTCAAGGCGGG 1824 29 100.0 32 ............................. AACGTGCCGAGGTTCGTGAGGAATTGCTGACC 1885 29 100.0 32 ............................. CATCACAGGATTACACGGCGACGGTGGATGCC 1946 29 100.0 32 ............................. ACCATCAACATACATGCGGACGGGACCATGAC 2007 29 100.0 32 ............................. CATGCGAGCTGCGCTTCGCCGGCACGCTGTTG 2068 29 100.0 32 ............................. CCGGCGCGCCCGAAGCCGACGCGACCGGACTG 2129 29 100.0 32 ............................. GCTGGGTCGCGGGCCGCAACATGGACTGGGGC 2190 29 100.0 32 ............................. CGTTGCCGTCCAAGCCCCAGCGACTTCCGCTG 2251 29 100.0 32 ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 2312 29 100.0 32 ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 2373 29 100.0 32 ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 2434 29 100.0 32 ............................. CATTCGGCAACGGCGGCAAAATCGGCAAATCA 2495 29 100.0 32 ............................. GTGCTGGGCCAGTTGAAGGCCGGCGTGAAGGA 2556 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 2624 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 2685 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 2746 29 100.0 32 ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 2807 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCCAGTACTGG 2868 29 100.0 32 ............................. GACGTGACCGTGAAGGTCGGCGGCGACAGCAT 2929 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 2990 29 100.0 32 ............................. GCGGTGACAGCGCAAGACACGTTAGCCACGAA 3051 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 3111 29 82.8 0 ............C......T....CG..C | AC [3133] ========== ====== ====== ====== ============================= ======================================= ================== 51 29 99.6 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CCGCAATCGCGGGGATGATCAGACAATGCTTTACACTATTTAGCTAATGACCTCG # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGCTCATGGACTGGCGGATGCCCAGTTCCCCGAGCCTGTTCCGCCACCAGTCGTGCTGGTATTGCCATCCCATGTCGCTGTGGAGTATGGGATCGGCGCCTTCGGGCAGCTTCTCCTCGAGCATGGCGAGCAGCCGTTGCTGCTGGGCGAGGTCGGGGTGCCGGCTGACATCCCAGGCCACAATCTCCTTGGATCCCATGTCGTATATGGGCGCGAGGTACGCCTTGCCGCCCGCCGCCCTGAACTCGGTGACGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4658-5293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTOE010000010.1 Bifidobacterium longum subsp. longum strain VKPM Ac-1635 sequence10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 4658 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 4719 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 4780 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 4841 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 4902 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 4963 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 5024 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 5144 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 5204 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 5265 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 10 29 94.2 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATAACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //