Array 1 8002-9312 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXQ01000045.1 Escherichia coli strain IH3c NODE_45_length_40905_cov_16.133086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8002 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 8063 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 8124 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 8186 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 8247 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 8308 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 8369 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 8430 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 8491 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 8552 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 8613 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 8674 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 8735 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 8796 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 8857 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 8918 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 8979 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 9040 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 9101 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 9162 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 9223 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 9284 28 72.4 0 .AA........C..T....A..-.C...C | T [9303] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1108-469 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXQ01000015.1 Escherichia coli strain IH3c NODE_15_length_93460_cov_17.283233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1107 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 1046 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 985 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 924 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 863 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 802 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 741 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 680 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 619 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 558 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 497 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //