Array 1 975219-978217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054257.1 Treponema parvum strain ATCC 700773 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 975219 36 100.0 30 .................................... TGTCGCTTGCAGTACCTGTCATAAATCCGG 975285 36 100.0 30 .................................... TGCTAATATATATAGCACAACTGGGTATCA 975351 36 100.0 30 .................................... TAATATATACTTCGCCAATCTCTGGATTAA 975417 36 100.0 30 .................................... GATTAGTTAATCCATTAATATAGTTGTTTA 975483 36 100.0 29 .................................... TAATCGCTTTATTACCTTTATTCCAAGTA 975548 36 100.0 29 .................................... CATTAGGACGAGAGTGATTAAAAAGGCTA 975613 36 100.0 30 .................................... AATCTCCTTCTGATTACTTTTGTTTTAAAG 975679 36 100.0 29 .................................... GAAATCGCAAAGAAAGTTCAAGAACTTGA 975744 36 100.0 30 .................................... TAAAGATGGTGATCAAGCTGCACAAAAAGC 975810 36 100.0 30 .................................... ACAGCTTGGGTAAATGAATATGCGTCTTCC 975876 36 100.0 30 .................................... ATAGTTATGTCTTTGAAATAGAATATTGTT 975942 36 100.0 30 .................................... CGGGGAGACAAACTACCGCTCGATATATCA 976008 36 100.0 30 .................................... AGAGACAGTGTTAATAAAAAATGGTATGTG 976074 36 100.0 29 .................................... GGGTCAAACGGATCAGTTAACGCTGAGTT 976139 36 100.0 30 .................................... TGATCACGTAGATTTGAACTTGTCCGACAA 976205 36 100.0 30 .................................... GCTTGATCATCGCCATGCGTTGTGTGTTTA 976271 36 100.0 30 .................................... AGAGATAGTGTTAATAAAAAGTGGTATGTG 976337 36 100.0 30 .................................... TACAAGCCATTTCAAGTGGCTGTTCCATGA 976403 36 100.0 30 .................................... GAGCGCCTCAAATGTTTGAGAACGTCAATT 976469 36 100.0 31 .................................... CGTGTCGTTAATTGATAAACTCCACTTTGTG 976536 36 100.0 29 .................................... TACATTTGTTTAGTAATATTGTGGTTTGA 976601 36 100.0 30 .................................... CAATGAATGTTACGGGCGCTTGTCCTATTG 976667 36 100.0 30 .................................... TAGAGGTTCTCGAAGGAATAATTTAGAATT 976733 36 100.0 30 .................................... TAATCTTTGTTCAAACTTTGATTCTGACTC 976799 36 100.0 30 .................................... AAACCGGGCTATTTCGTTACCGTGAAGATA 976865 36 100.0 29 .................................... CTGTTTCCATGTATAAGGCAAAAATTGAA 976930 36 100.0 30 .................................... TTTCGGATAAGACGGGTTTAAGTTTGAGCA 976996 36 100.0 30 .................................... TGCCGGTGTCGGTGCAAGTGATAGCCTTTT 977062 36 100.0 30 .................................... CGCGCAGAGGCTTCGACACTATCACAGCCA 977128 36 100.0 29 .................................... ATGGCGTTAAAACTAAGAGATCGATATGG 977193 36 100.0 30 .................................... TAAAAAAGTTTTGAACAAAAAGAATGAAAT 977259 36 100.0 30 .................................... CTCAAACCTTTTCATTCTTCACCCACCACA 977325 36 100.0 30 .................................... TCTTATAAACAGACAGTTCGACAAGGTATT 977391 36 100.0 30 .................................... TCTGAACAATAGTCCTAGCGCTATGAGCAG 977457 36 100.0 30 .................................... TCTAAGGTGCAGCGGCTGTATGGTATCGGT 977523 36 100.0 30 .................................... TGCGTGATTGCGGAATTCGATAATCATCGG 977589 36 100.0 30 .................................... TCGTAGACGGAGCTGTTAATAGAACTCCAT 977655 36 100.0 30 .................................... CGCCATACTCGCCACAGGCGAAGTACGAGA 977721 36 100.0 30 .................................... GAAACTGGTAGCGTAAAAATCGGCTCTCGA 977787 36 97.2 30 ...................T................ ATATGAAAGTCATAGCGGAAATGAAAACCA 977853 36 97.2 30 ...................T................ CTGTAGGTTTTGCAGAAATAGAACCGTTCC 977919 36 97.2 30 ...................T................ GGTACGGTCAATAAATCGTCCCACTTCATG 977985 36 100.0 30 .................................... TTTCGCCGGCCGCGGCGTCATCAAGCGCTT 978051 35 97.2 30 ........-........................... ACCTGAACCCATGCACTTTAATCGTCGAGG 978116 36 97.2 30 ...................T................ AAAGAACTACAAGGGGAGTTTGCCGCAAGC 978182 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.6 30 GCTATTTTACATCAGAATTCGAAATCAAACCACAAC # Left flank : TTCATTAGTAAAAGTGCTTACGGAAGAATTCGAAAAAATGGCCTTACCTGTTTTTATATAGCTATGAGTTTTGAACGGATAAACGCTTATAAGATAATGTGGATTTTTTGTTTGTTTGATCTGCCGACAAATACAAAGCCTCAGCGAAAGCGCGCATCGGAGTTTAGAAAAAAACTCTTGGAAGACGGATTTGATATGATGCAATTCAGCGTATATAAAAGATTTTGCGGCAGTAAAGAAGCTTGCGCGGTTCACGAAAACAGAATCAAACAGTGGCTGCCGCGGGAAGGGACGGTGAGTATTTTAAAATTTACCGACAAGCAGTTCGGAGAAATACTGACATATATCGGTTTGTCCCCAAAGCCTAAAGAAAAAGCGCCTAAGCAACTGGAAATGTTTTAAAAACTGAAAAAAACAGATCGAGTTCTCACCCGTTTTCCCAGTTTTTTTGAGTAAAACAAGCATAAACCCTATATTTAGCAAGCAATTATAGAGTTTAT # Right flank : CACTAGCAGAGCTTTTATATTTGATGTTTCCGCAACCTGCCACCGATTGCGCATCAAGTAATGACATAGATAAAATAAAAAGAGCATACTGGCGGGGCAGCGTCGATAGTTAACAACCCGAGTATTCCAGCCCATAGTACGCTCTTTTCATGTATAACAATAACTCTGTTTTTCTTGATTATCAATAGCTTTTTAGTTTCTTTTTAATCACGGCTACAACAATTTCAAAGTTCATATGAAAAGTAATGATCAAAAAAACAGCGAACCTTGGATAATTTTTGAGACATCCGCATGATTTATCGCCTGTCCAAATTATTTTTTTTGAGCCAATCCGAAAGCAGATCGGCGATTTTAATATTGTTAAGATCCGAAAAGATAAAGTGCGTATTTCCCGTAATACCGATTTCGGGAAGGTGGACCACCGCCGCGTTGCCGCCGTATTTATTGATCGTCGCGGCAAAAGAACGCGCCATGGCAAGTTCGGCGCGCCATTGATCCTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATTTTACATCAGAATTCGAAATCAAACCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //