Array 1 6093-313 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASY01000013.1 Actinobaculum suis strain C1-9-1 C1-9-1_contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 6092 29 100.0 32 ............................. CTTTCGTATTCTGCTTTGTGTGCTTTGCATAG 6031 29 100.0 32 ............................. ATGCTTGTGCAAGGTCAAGGCACATATTTGAC 5970 29 100.0 32 ............................. CTGTTCGGTGTGGTTTTTGGGTGCACTTGCCC 5909 29 100.0 32 ............................. GCGGAAGAATTTTCCCAGCTCCTTACGCGGGG 5848 29 100.0 32 ............................. ACATGGGTAACCCGCGCGCAAGCCGCCAACCT 5787 29 100.0 32 ............................. TCACTGAGTGCTCAGGAAAAATGCACTATAGG 5726 29 100.0 32 ............................. AGGGCGGAGGTTGATCGAGCAGGCCCCGGGGC 5665 29 100.0 32 ............................. CAGGGAGCGAGAGCAGGAAAAGGTAGGAGAAT 5604 29 100.0 32 ............................. AGTGGTGCTCCTATGCAGGGGTACCAGGGCGG 5543 29 100.0 32 ............................. AACATGGAAATTCTCGAAGCAACACCAGAGAG 5482 29 100.0 32 ............................. CACTAGGGAAGGAAACAGTAATGAGTAAATAC 5421 29 100.0 32 ............................. AGGGGTTCGATCCACACGATTCGCGGCGAAAC 5360 29 100.0 32 ............................. CCTTCAAGCTCTACGAATGTCGTTAGTGAGCT 5299 29 100.0 32 ............................. TCCCCTATGTCTACGATAGTGAGGCCAAAAAA 5238 29 96.6 32 ............................G GTTCCTGGAAGCTGACCCTGAACCGGTTCCGG 5177 29 100.0 32 ............................. CAGAAAACGCGAGCGTGTCGGAGGTAGATGGT 5116 29 100.0 32 ............................. CGGTTCCGGTTGTGTTGGCTCATCCTGTGCCG 5055 29 100.0 33 ............................. CTTCCGGTATTCGGAAGAAGGTGTGAGCCGGCG 4993 29 100.0 32 ............................. CAGCGATGATATCGCGGCCCTATCTCTCGAAG 4932 29 100.0 32 ............................. TGAGCCTTGCGGTGACCCCACGCACGCGGGAC 4871 29 100.0 32 ............................. CGAATAGTACCCTACGCAGTAGACGCCACCTC 4810 29 100.0 32 ............................. TACGCGGCGGGTCCCATCGATCTTCTCCGTGT 4749 29 100.0 32 ............................. TACTTACGGCAAAAAGTTGAGCAATCGGGTAA 4688 29 100.0 32 ............................. TGGACGCACTTGTGAATGATCTTGGGGCGGCC 4627 29 100.0 32 ............................. CGCCCCCGATCGGGCGGCCACTGTTTCCCTGC 4566 29 100.0 32 ............................. TACGTGCTAGATGTAGCCGTGCCCCGCGAAAG 4505 29 100.0 32 ............................. CACTATCCAGCAACCGATCACCCTGGTGCCGG 4444 29 100.0 32 ............................. TACTCGCTAAGACCGGGGCGACTCTCATCCAG 4383 29 100.0 32 ............................. CCTACTCACGGCCCTGATTTTGGGCGTGGTGG 4322 29 100.0 32 ............................. GCAGGTAAAGGCCCGGGCCAAAACAAGGACAT 4261 29 100.0 32 ............................. TCGTGTGCTGTGCTCGTGTGATGGTGCGGGCC 4200 29 100.0 32 ............................. AAGTAGCTCGATGCCCCCAACACGCCACGTAG 4139 29 100.0 32 ............................. GTGTTTAACGCGTTTGTGAATTATGCGGAGAA 4078 29 100.0 32 ............................. CGTCTACGGAATCGGCCTAGCGGTGCTACGGT 4017 29 100.0 32 ............................. CGGAGGCAACCGTAGGAGCCTAGGGCGATAGC 3956 29 100.0 32 ............................. TTCAGAAAGATACGTGATACGGGATGAAAAAG 3895 29 100.0 32 ............................. TTTTCGCTCTTCTTCAAGCCAATCGCCAAAAG 3834 29 100.0 32 ............................. TTGTCGCAGCAGACCGCGCGCTTATCGTGACC 3773 29 100.0 32 ............................. CAGCGTTGCAACCGTATTAGCCGCATCGCCCG 3712 29 100.0 32 ............................. CGACCTTGTAGCGACGTCAGAGTTTCTTGGAA 3651 29 100.0 32 ............................. AAGACCCTGTCAGAAGTTACGCGTAGCCAGGA 3590 29 100.0 32 ............................. CCCGGCCGGCCGCGTATCCGCCCCACACTCCT 3529 29 100.0 32 ............................. GGGGTTCGGGCGGATATCCGCCGGGCCGTGCT 3468 29 100.0 32 ............................. CGTCATTGGCCCGAATTCACCATCGACTACGC 3407 29 100.0 32 ............................. CTAGACCAAGCTGAGCGAGTGGACCGGAAAGG 3346 29 100.0 32 ............................. GTAACCAAGCGCGAGCGGCAAATTTGGCGGCA 3285 29 100.0 32 ............................. CTACCTAAAACTCGATCCACCATCTGCCGCGA 3224 29 96.6 32 ............................T GCGATTATTGGGGCCACATCGGACCTCACCCC 3163 29 100.0 41 ............................. CAGGAATACAGGTATTTTCTGGGCCGGCTTGCCGGCCATAA 3093 29 100.0 32 ............................. CTGCCCAGACCCACTCCCACCGGCCACCACAT 3032 29 96.6 32 ............................A CGCCACGCGTGCACAAGCTCATGAGCGAGCGT 2971 29 100.0 32 ............................. GTGGGATCCACAGACCCGCCAGCGGAAAATGA 2910 29 96.6 32 ............................T TCGGCTTTCTGCTGACCGAAGGTATTAAGCAG 2849 29 100.0 32 ............................. GGGTCGCTAGCGCTTCCACCGGCGGGCGCGTT 2788 29 100.0 32 ............................. TCTCCGATGACGCAGTGAGCGGATCCCAAAAG 2727 29 100.0 32 ............................. CCCCGCACCTCACTCGTTCTCTTCTTCGACAA 2666 29 100.0 32 ............................. TCTCCGCAATCCGGAAGGTTGGCGGTCTGTCG 2605 29 100.0 32 ............................. CGATCGCGGCATACCGGTCTGGATTAGCTTGG 2544 29 100.0 32 ............................. TTCTTCTCCCCTCCTAACAGCTTTTTGCACCC 2483 29 100.0 32 ............................. CAGGCAGGCCCGCTCATCGAAACCCCCAAACA 2422 29 100.0 32 ............................. TGGGAAATATAGGACCGCACCGTATTAGGAGA 2361 29 100.0 32 ............................. GTAGCCGCGGGCGCGTATAGCGGCGGCAAATT 2300 29 100.0 32 ............................. ATGGGCGGTTGTGGGGGTGGTGGTTTGTGGCT 2239 29 100.0 32 ............................. GTGGTAGGCGACGAAATTCATTGCCCCCACTA 2178 29 100.0 32 ............................. GGCCTTAATTTTGAGGGTGACCTCCCTATCGA 2117 29 100.0 32 ............................. TACGAAGAGCCAATACGGGAATAACTCAATCT 2056 29 100.0 32 ............................. TTCTGGGACTTTCCGCTCTTCTTCTAGCCAAT 1995 29 100.0 32 ............................. TAGACCTAATCGACACCCTCGACTATTGCCCC 1934 29 96.6 32 ........................C.... GTACGGGGATACAGGCCGCCCGAACCGGCTTG 1873 29 100.0 32 ............................. GTATGATCTGGTGGCTGATCGGGGCGGGATTA 1812 29 100.0 32 ............................. AGAAAGCGACATCGCCGGGTTGTGGGAACACC 1751 29 96.6 32 ............................T CGTTGCTGTGGGCGGGGCCTATGGGCGGGGAG 1690 29 100.0 32 ............................. CGAATTAACCGGAATAAACGCGTGCACAGAAT 1629 29 100.0 32 ............................. CGGTAATAGGGTTACGTATACCGCGGCCCAAC 1568 29 100.0 32 ............................. CGCTCGCTCCACCACCTGCCGCGAAACGCCCG 1507 29 100.0 32 ............................. GGGCTTTACGCTCTGCCAGGCCTTCACGGCGC 1446 29 100.0 32 ............................. CTGCTCAGGACGCGGGCGCGCAACACGGCCGG 1385 29 100.0 33 ............................. CCCTAATCAGTGTGCCCGCCGGTAATAGCGGCG 1323 29 100.0 32 ............................. ATGCCATGCTCCACTACAACAAGGACACCCCC 1262 29 100.0 33 ............................. GGGCACTGTCTTTTCTTCCATCTCGGTTTCCTT 1200 29 100.0 32 ............................. CTTCGGGGTCTTTCAATCCCCAGCCACTAACG 1139 29 100.0 32 ............................. CTGCGGTACCGGCATGGCTGGAGACTTCAACA 1078 29 100.0 32 ............................. TTCGAGAACTACGCCTTTGATGTCGTCGGCTA 1017 29 100.0 33 ............................. AGCTCAGGGCCTGATAACTCTCGCCTACCGCAA 955 29 100.0 32 ............................. GTATTAGTTTTGCGCTTGGTGATGAAGCGGGC 894 29 100.0 32 ............................. GGGATGAAATGATCCCGCTAGGGCACCATGTT 833 29 100.0 32 ............................. CGCCCTGGGAGATGGTTTGCCTTACGGTCGCA 772 29 100.0 32 ............................. GGAAGAAGCTTTAGCCCGGGCCCGGCTAGCCG 711 29 100.0 36 ............................. CCCCCCCCGCAGGATCGCGCCAGTCGCCTCCTGCCG 646 29 100.0 32 ............................. CAGGAATACAGGTATTTTCTGGGCCGGCTTGC 585 29 100.0 32 ............................. CGCCGCTATGATCTCTTTCTGCGATAGTCCAA 524 29 100.0 32 ............................. GTGCGGATCAAAATCTGTAAACGTTCAACCCC 463 29 96.6 32 ............................A CCGCCCAGCTCGTAAGCTTTATGCGTTGCACG 402 29 100.0 32 ............................. CAGAGAAACCCTAGGGTTGGCCAGTTTACTTT 341 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ========================================= ================== 95 29 99.7 32 CTCTTCTCCGCACGCGCGGAGGTATTTCC # Left flank : CGACGTCGGCTGCGTAAAGAAATACATCGGCAAAATGTGTTGCCAACTATGCTTGATGCTCTAATGGAGATCTTGGAGCCGTATCTGCCGCATCGCGACGATGACAGACTTCTCGATGACTCAGGGGAAGTGCCAGGGCATATGCAGTATGGCAAGGATGAAGAATAGTGTTTGCAGTCATTCAGCTTTCCGCAGTGCCTGAGCACGTACATGGATATGTGAGTAGATTCCTTTCCGAAGTGAGCTCGGGGCTTTACGTGGGCGTTATTTCGCGCAATGTTAAGGAGCAGCTCTGGGAACGCCTCAGCACAGTAACCGGAGAGGGTTCCGCAGTCTTGATCTACAACGATTCTTCCCGCGAGCAAGGATTTGGAATTGAAATGAGCGGGCGGCAAGCCTGCAAGGCACTCGACTTCGACGGCTTGACGCTTTTTGCTTCGCGCCCCGGTAGGATTAACGAAAATTGGGCGAGCGGCCGATAAAACCGCAGGTCATTTAGG # Right flank : CCAGTGTTGCAACCGCATTAGCCGCATCGCCCGGGGTTTTGTAATCCTCCTTGAAGTTCACGGTGCACGTTGCGGGAAGGGTGTGGCGTCATGCGTTGGCGGGCGTCTGCGTGCGCTTTGGATCCGGCGCGTGGTATTGGTGCGCACTGCAAGCTCGTGCTGCTGTCGTTGTGTGAGGTTGCGAATCATGAGCCGGTGCCGTGGCGGTCGGTGGGTGAGTTAGCTCCTCGTTCCGAGTGTGGGGCTGTCCCTTATTCCCCTGTGCCCCTCCCCCCGCCACCCCCCGGTCTCGCCTCGGTGGCCCGCGCCCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACGCGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //