Array 1 94200-93315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHKN010000012.1 Escherichia coli strain 6190 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 94199 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 94138 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 94077 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 94016 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 93955 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 93894 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 93833 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 93772 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 93711 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 93650 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 93589 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 93526 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 93465 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 93404 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93343 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121331-119899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHKN010000012.1 Escherichia coli strain 6190 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121330 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 121269 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 121208 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 121147 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 121086 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 121025 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 120964 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 120903 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 120842 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 120781 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 120720 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 120659 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 120598 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 120537 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 120476 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 120415 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 120354 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 120293 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 120232 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 120171 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 120110 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120049 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 119988 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 119927 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACTTAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //