Array 1 12500-12353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCO01000054.1 Corynebacterium jeikeium strain Cj47445 353, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 12499 23 100.0 39 ....................... TCCCACCCAAAGACAACCCCCGGAACCCCTCAGCGAGCC 12437 23 100.0 39 ....................... TTCCGACTGGGCCATACCCCCAAAGGCCTCGAGCGAACC 12375 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================= ================== 3 23 100.0 40 ACCCATTCCCGATCTAACGACAT # Left flank : CTGGTCAGACGAGGATCAGGAATTCGTCGCAACTGTGACCGAGTTTCCGTCCCTGTCGTGGCTGGCTCCCGACCGCGCGCAGGCCGAAGCTAGGTTGCTGGACCTGGTGGCCGAAGTTGTAGAGGACATGACACAAGCTGGGGAAACCGTGCCGGAGCCGCTGGGGTTGCGGCGATTCTCGGGGAAGTTCAACGTGCGAACTTCGCCGTCGTTGCATCGGATGCTGGCGATCGAGGCGCAATCGGAGGGCGTTTCGCTGAATACGCTGGTTAATCAGAAGTTGGCGGCGCGGTAGTTGCGGATTTTTATTGACGCCCACTAGCAAGCGGCGGTTGGAGCGGTCGCCTGGCCTGGGAGTTTCGGCGCGACGGAGGCTGCGTGGGGGCTCTTGGCGGGCCGGAATGTCGCTAGAACGGGAAAACGTCGGCGCCCGCAGAGCCCCGCAAAAATCCTCAAAGCCCTGACCTGCGATTTTACCTATTTGCAAACCAATACCATTA # Right flank : CTGCAGGTTGGTTGTCAGCGTTTGCAGGTGGCCTGTCAACATTTCCACCCAGGAAGCCGCGCGAAATTGCAGCTCCTGTACACCGCCACGGGGAACTTGGCATCAAAAAATTTTTGCGCCTGTGGATAAGTCAGATGCCGTCCACAATTTATCCTCAGTGCACCAGATTCCAAACACACTACTCACGCAAAAGGCGTAAGAATACCTCCCATGACGGGGGACAACACCAACGCAAGCACCAGCACATCCGCCACCAGCAAAAACGCCCAACCCACCAAGCCAGCATCCACCAAACCCAGCGCCTACACGCCAGCCAAGCATCACCAGCCCGTAAAACACCTGGTCGATGTGCGCCGAATCGACCCCTCCCAAGCCCGGAAATGGCAACGCTGGGCCGAGAGAGGCGAAGCCGTCCGCCTCGCCCGCGGGATCTACATACCCGCAGGTCTCTGGCGCGAGATCGGCCAACAACCGAACGCGGCAGAAATCCAAGCGCAGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCATTCCCGATCTAACGACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 19901-22309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCO01000075.1 Corynebacterium jeikeium strain Cj47445 375, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19901 29 100.0 32 ............................. CGCCTTATCAGCCTCAAACAGCTCCACAAGCA 19962 29 100.0 32 ............................. TTCGGTGCGGTGGGGGCGAGGGTGAACGGGGA 20023 29 100.0 32 ............................. GATCGTTTGTGGTGGGCGACGTGTGGGGCGGC 20084 29 100.0 32 ............................. GGTAAAGTCCTGAAGGCCACTACTGACCTGGC 20145 29 96.6 32 ............................T CCTCACCACGTACCTCAACGACGTCACCATCG 20206 29 100.0 32 ............................. TGGACGCGGAGGGTGGCGTGGTCGTTGGGGTG 20267 29 100.0 32 ............................. TCGCCGGGGTGAACTTCCCGCCGCCGCCACAG 20328 29 96.6 32 ............................T CGTGCCCACAACCCTAGATGTGTCGTGCCCCT 20389 29 100.0 32 ............................. AACCAGCGCACCGAACTGTTCATTGAGGATGG 20450 29 100.0 32 ............................. TATCCTCGCGTTCCGCGCCGTCCTCACCCACG 20511 29 100.0 32 ............................. GCATCTCTTGACCGTGGCGCGACAATTGTTGC 20572 29 100.0 32 ............................. CTGACATTCGCCCACCAAAGTCAGTGGCTGCA 20633 29 100.0 32 ............................. AAGCCGACGAGCCCCGACCACAATCCAGTCAC 20694 29 96.6 32 ............................C AATTCGGTTTCGGGCTGGAGGAGTCCGCAGGT 20755 29 96.6 32 ............................T GCCGACGAGGTTTTGTTGTGCGTCTTTGTTGT 20816 29 100.0 32 ............................. TTGTAGGTTGTGCCATTCTTCCTCTGTGGGTG 20877 29 100.0 32 ............................. CAGACCTGAGAACAGACTGACCAATCCACTCG 20938 29 100.0 32 ............................. CGTCTCGCTCAAGATCGCCCGCGGATTCTGCA 20999 29 100.0 32 ............................. TGCCGATCCCGTCCGGGCTGCAGGCTGCACTA 21060 29 96.6 32 ............................T TCCTCCGATAGTGACCAGCACACCTAGTGCGA 21121 29 100.0 32 ............................. CCCGTTTAGCCCGAGAGCGCGCGAAGTACAGC 21182 29 100.0 32 ............................. AATCTTCGAGCCGTTACCGCCGTTGATGGTGA 21243 29 100.0 32 ............................. CCTTTTCACCAATCCAATCAAAAACGGGTGCG 21304 29 96.6 32 ............................T CATCGGCGGTCGCCCGGCACGCTCTGGGTGAT 21365 29 100.0 32 ............................. TGGTTCACTAGCTTGACATCTGTCACTAAGGC 21426 29 100.0 32 ............................. GCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT 21487 29 100.0 32 ............................. TGACGACGAACGGGTTCGGAGACGAGATAGAA 21548 29 100.0 32 ............................. GCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT 21609 29 100.0 32 ............................. TACCAGAAGGCTGTGGCTTCTGGGAATTCTGG 21670 29 96.6 33 ............................A GGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCT 21732 29 96.6 32 ............................T GCGTACGGTGTGATTAACCCGGCGCTCCGGTC 21793 29 100.0 32 ............................. CCGATCGAGAAGTGCGGCAGCTCTTCGGCGGA 21854 29 96.6 32 ............................T CTTTCGATCTGCCATGTCATCACCTCCCTAGG 21915 29 96.6 32 .............A............... CAACGCTCAGCACTTGATTGGACTCGTCGCGC 21976 29 100.0 32 ............................. GAGGGTTCATGAATCAGACGCACAACGATGCT 22037 29 100.0 32 ............................. GTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAG 22098 29 96.6 32 .C........................... TTCGCGCTGTTCAGTGTCAGAGAGTGCCATGA 22159 29 100.0 32 ............................. TCGATCCGGTTGCCGTTATGTAGGTTCACACA 22220 29 100.0 32 ............................. TCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTG 22281 29 93.1 0 .......................T....T | ========== ====== ====== ====== ============================= ================================= ================== 40 29 98.9 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Left flank : TATTGATGCTGAGCTGGTGTTGTGGTCGGACTTGGAGGTCGTGGCTTCCAAACGCAATTGGTCAGACGATGGGCCAATCAGATGATGGTCTTGGTTGTATCTGCATGTCCTGCGGGTCTTCGCGGTGACCTCACAAGGTGGCTGTTGGAGATTTCTCCAGGTGTGTTCGTAGGGCGCCCCAGTGCCAGGGTGCGCGACCAGGTGTGGGAGCGAACATGCGACCTGGTGAATGATGGCCGAGCGATCATGGTGTTCCAGGCAGCAAACGAGCAGGGCTTTGATTTCAAGACTCACCGGCATAACTGGGTTCCAACTGATTTCGATGGGGTGAACTTGATTACGCGCCCCAACAACCGGGCAGCTTCGACGAGGCGGCGCGGATGGAGTAATGCGCGGAGGAGGTAAAGCGTCGGTGATCGTTCGCTAGTCCGGTAGGCGGTGGTGAAAACAAGCTGAAGTAGAATTGGCCCAACGGCTCAAAGAACCACAGCTCAGAGAGT # Right flank : TCAGGGAGTGCTATCTTGACGCGATTTCCACGGATCACCAGCATTCACCGCTCCTGAAAGGCGGGACGACCTCCAAAATGAAGAAAGCTTTCTATTCAATGCTTAACAGCAAAGAAATTCAATAGAAAGAAACGAAACTAAATTGAAAAGATCGTGGTTACTGATCTTCTGATACTCTCACATAATCAGGACGATGTTCCTTTAGGAAACTCCGTAAGCATTCGCCTGGGTTACTGCCAGGTGAAAAGAGATCGAGGATCTTATCCAACATGTCAGGCGCGATAAACACACCACCTTCGACCGAGTAGTAGACCGCATTCTCGAGTGCATATTCGAATTCTCCCCCTAAGGCGGGAGTAAAGGCGTGGTCAATCCCTGCAGTGACGAACTGCTCTCCATAACGGGAAAGAAATTCTTCGAATACATCCATCGAGGGATCCGCACGCATCTTACGATCCTCTCCGCTTTACCGCACGGTAGCTAAAAACGTGATTGTAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //