Array 1 6899-7263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000021.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6899 36 100.0 30 .................................... AAATGCTCGTTCCGACAAAAAAAACACGGT 6965 36 100.0 30 .................................... ACAATGTATTTTGATTATGATAGCTGCTGT 7031 36 100.0 30 .................................... CAGCTACAAAATATTCATGTTTGGAAGTGA 7097 36 100.0 30 .................................... TAGAGGTTGTAAATTAGCTCCTAGCGGTAT 7163 36 100.0 30 .................................... AATGTACAGACCACAAAAACCTTTTAATGT 7229 35 86.1 0 .........................-..TTT....T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Left flank : TATTAGCAAAAATATATATGACAATAAAAAATAATATAGCAGATGATGTAGATAAAGAAACTGTTCTTTTAAATGATATAAATAAAATAAATAGATTGTTTATTGAAGAATTAGAAAATTATAATTTGGATTATTCTTATGAGATGAATATAAAGATAGAAAATTATTTAAAACTGTTAAATTTAAAGATTCTAAGTTCTGGAGAATCAGTATTTAATAAGATGATAGATTTAATTGAGATTTATTCTGAATTGTTTAGTGAACATGTTATAATATTTATAAATATTATGTCATATTTAAGTGATGATGAATTAGAAGAAGTTTTAAAATATAAGCGATATAAAAAACTAAAATGCATATTTATTGAGAATAATTTTACTAGAAATGTATCAGTAAATAAGTATATAATTGATGATGATTTATATATGTATAAAGTATAATACTATCTAAATAACAGATGAAGTCGTTATTCATTTATGCTTTTAAAATCTAATTTGAGG # Right flank : TCAACGCTAGTTCATATATTAAAAAGATCAATAAAATGAATCTTTATTTTTATGAGATTAAATTATTTATTTCAATTAGTTACCAATAAATATGTTATACTAATAATAATTAGTATACAAAATCTTAATATAAGATATTTTAAAGATAGGGAGATTGAATTTGATGAAAGGGTTACCGATAGGAATAGAAAATTTTAAAAAGTTAATTGATAAAAATGTATATTATGTTGATAAAAGCAAATTAATTGAAGATTTAATAAATGAAGAAGTTATTTTGTATACAAGGCCTAGAAGATTTGGTAAGACTTTAAATATGTCAATGCTTTATTACTTTTTTTCAATTAAACAAAAAGAAAATGCTTATCTTTTTGATAACTTAGAAATAAGTAAAAATATTGAAGTTATGAAACATCAAAATCAGTATCCTGTTATTTTTATTACTTTGAAGGATATGAAAAGTAAAAGATTTAATGATCAAATTGCAATATTTAGTAAGATTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 32657-33870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000021.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32657 30 100.0 36 .............................. ATATTTATATTAGTAAAAATTATTTAAATGGTACTG 32723 30 100.0 38 .............................. TTTTTTAAATCTTTTTTTCTGCTCGTAAAAAAATTAAC 32791 30 100.0 37 .............................. CTTAAAGAATATTTTAGCTTGTTCCCCTTTTAGAAGA 32858 30 100.0 35 .............................. CTCTTCCATTGCACGTGCTGTAAACACATTTGCAT 32923 30 100.0 35 .............................. GGGTACCGACAATGCAGGCAAGGCAATGGTGGTAG 32988 30 100.0 36 .............................. AGGTCATTGTCCTTAACAAGCTCTCGTACCATATCC 33054 30 100.0 36 .............................. TCGGATTTGACTTTTTCAGTTATGTAATCAATATAG 33120 30 100.0 37 .............................. GTATCTTCTACAACCGCTGTGGCCATTTCCACATCAC 33187 30 100.0 35 .............................. GATATAACCGAGATCTATACAGCTATTCGCCCGAC 33252 30 100.0 35 .............................. CCAGTACCAAACCCCTCAGGTACATATTTACTGAA 33317 30 100.0 35 .............................. AATTTGGTCTGCACAAGATAATTATCAATTAAGGC 33382 30 100.0 35 .............................. TTAGCAAATGAATTAACAACTGATTTTATTCCATT 33447 30 100.0 36 .............................. TATCGTGTACTGCACAAAACCGTACCATATCGATAT 33513 30 100.0 36 .............................. CTATACAAATTTGCATCTGTTGCGTTGTCGCAGAAA 33579 30 100.0 35 .............................. CTACTTTGGGAGAATTAGGTTATTTTTGGGAGAAT 33644 30 100.0 35 .............................. TATTGAAGAACAAAATCAACTGCATTACCAGCTGT 33709 30 90.0 36 ........TC..........C......... GCAATTTCTATGAATTTAAAAATCGAATTTTTGTAA 33775 30 80.0 36 .C......AC.....AG.......C..... TAAAAGAAGGCATAACCTTCTTTTTCTTGTTTGTCG 33841 30 86.7 0 ........TC........G.........G. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.7 36 GTTTAATAGTAACATTAGATGTATTGAAAT # Left flank : ACCACTTTTATACCATTTTCAATAAAGGATAAATACTAATGAAAATAAAAAATCATAATTATGTAATTGTTTGTTATGATATTGGTGAAAAAAGAGTTAATAAAATATTTAAGATTTGTAAAAAGTATCTTCCCCATTATCAGTATTCTATTTTTAAAGGCCCTATCACACCAGCAAAGTTAATTTTGTTGAAGAAAGAATTACAAAAGGCTATAAATAAGGATGAGGATTGTGTCAGTATAATTAAATTACAAAGTGAAAGTTTATTTGATGAAGAAATATTAGGATGTCAAAAAGAAGAGAATACAGATAGTTTAATTATATAATTTACCAGGTAAAATTTTTAATAAAATGTCTAAACCTCTTGTTAGAGTAAGGGTTCAGGAGAATATGATAGAAAATTATAAAAAGAAGAATTTAGCTGGTAAAAAAATAGAAAGTTGTTGATATATATAGGTTTTGAGGTATAATAAAAAATGAAAAGTGGCTAATTTACTAGG # Right flank : TATTTTTGATATTAAAACGTGTTTGAATTAAATTTAAAGTTTTATTTATGATGTTTGTTATATATTATGGGTAATTGATAATATAGATGGCATGATTTGATAAATTGTGATAAACTTTAAAGCATGAGGTGTAGGTATGAGAAATAGATACGTAGTTTTAGATTTTGAAACAACTGGTATTAATATGTATCATGATGATGAAGTAGTTCAAGTAGCAATAATTAATCAGGATGGGGAAGTTTTGATTAATGAATTGTGTAAGCCAAAAAGACATTTTTCTTGGTCTAATGCGCAAAGAGTGCATGGTATTTCACCATCTGATGTTAAGGATAAACTTAGTTTTGAAGATTATATCGATGCAGTAAAAGATATCTTTGATAATTGTGAATTTATTGTTTGTTACAATATTGCATTTGAACAAGGAATATTAAAGAATTATGGCGTAGATGTAGAAAAATATAAATTTAGAGATCCGATGAAAGAATTCGCACCTATCTATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAGTAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 22323-21463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000001.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 22322 33 100.0 36 ................................. TAGAGGCACGGGTGATCGCATGGCTTGCCAATGAGA 22253 33 100.0 36 ................................. CCAAATCTACTAGAAGAAGCGCAGATAGCTAGTGCG 22184 33 100.0 37 ................................. AAAGATTTAGCATTAGCACAACAGAAGCTAGAAGCGA 22114 33 100.0 36 ................................. TTAAAAAAAAGACTAACAGAGGAAAGATGGTGATAC 22045 33 100.0 35 ................................. TATTGCGGATCTTTCTGAAGAACTATATGGTCAAC 21977 33 100.0 36 ................................. AAGACAAGAAGAGCTTGGAAGGATAATTTTAAAAAT 21908 33 100.0 35 ................................. CACAGACTGCTTGTAGGAATAATTTTTTTTAGAAC 21840 33 100.0 36 ................................. TGAATTAAACTCGGGAATAACGATATCGATACATTT 21771 33 100.0 36 ................................. TCGCAGTGTTTGCATCTTAAACAATTAAAGACGCAG 21702 33 100.0 36 ................................. AGATGCACTATTTTGTTATCTGGATAGTTTAGTGCA 21633 33 100.0 36 ................................. TGGATAATTCCGGCGGATCAATTTGAAATTACAACT 21564 33 100.0 36 ................................. ATTGCTCGAATAAAGCTAAAAATAAAATTAGATAGT 21495 33 78.8 0 ............G.....G.......CACT.T. | ========== ====== ====== ====== ================================= ===================================== ================== 13 33 98.4 36 ATTAATAATCTAACCATTATATGGAATGTAAAT # Left flank : CTTATCAAACATTTAATTGATGAAAAAGTGTATGACGGATTTAAAATATGGTGGTAATATGTATTTAATAATAGTATATGATATAAAACAAGAAGAAAATTATGCTAAAAGACAGAGATATGTTTTTAAAACATGTAAAAAATATCTTAAACATATCCAAAATTCTGTATTTGAAGGTGAATTAGATAGAGCACAATATATCTCTTTAACAACAGAATTGAATAAATATTTATTAAAAGATATAGATTCATGTCTAGTTTTTTATGGAAGAAATAATATTTGGATGAAAAAGGAGTTTATAACAAAAAGGTTAGAAGATGATGATCAATTTCTATAAATTGATTTAAGTCGATCTCCATTCTGTAAAAATACCCAGGAATCGACAGAAATATTTTGAAAATATAGTAATTAATTTTGTATTTTTGTATATAAGTAGTTTAAATAAAGGAAAAGTGATATACTTATTACATAGTTTTTCTAATAATTTATTGTTTTAACGG # Right flank : TTTAATCATTAATTTTTATTTTATAATTATAATATATAATAACTAAATTTAACTAAATTTAATTTAGTTACTCTAGTATAAGTGGTCGAGATTTGCTATAATCTAGGTATTAAAATTAGAGGGAAAAGTTATGGAAATATATGATAAACTTACAAAACCAATATATGAAGTAAACTATTTAAGAGCTGAAAATGTTGATCGGTATCGATTAATCATCAGATTTTTTCTTTTAGAATATGAAAAAATACATTATTGGTTACATAAAGAAGATGTTTATGAAATAATCCATCAATTAGATGGATACCAGGAATATACAATTGAGCAATGTCAACAGGATCTTCAAATGTTAGTTAATTGGGGTAATTTAACAGCTATTCAGGATAGTAATAAAGTTCGTACTATTGAAGATTTTAAAAATAAAAAATATCGTTATCAATTAAGTGAATATACAGTAAGAATTGAAAGATTAGTATTAGAGCTTGAAAACTTAGAAAACGTTG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAATCTAACCATTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [95.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 31320-30805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000001.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 31319 33 100.0 37 ................................. TAAGCAGGAAATGCTAAATAAATATAATATTGTAAAC 31249 33 100.0 35 ................................. TTTAGTCATTATGGTATAGTGCCTCCTCTTACAAA 31181 33 100.0 36 ................................. TTCGTACACCAGGTGTAGCAGAAGTAGAAATCACTG 31112 33 100.0 36 ................................. ATCGTGGAGTTTATGGAAAAACCAAGTGCTGATACG 31043 33 100.0 36 ................................. GAATAATTAATTTTTTTTCTGGAAGTGTACGTCCTT 30974 33 100.0 36 ................................. GCTAATTCTGGGGATGTTGCACAGTCTTTTAATTTA 30905 33 100.0 35 ................................. AAAGAAAATATAACTATAAGTGAGATTTCTTATTT 30837 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 100.0 36 GTTAATAATCTAACCATTATATGGAATGTAAAT # Left flank : TATATATATCCATGGAGGAAGAGAAAACGGTAGATTAGGATCATTAATAAGACAATAAATTGAAAATAAAAACAATAAACCACTTGTAAAAACTCTAATTCGATTCATTCTTTTTATCCATCCCTTCCTTTTTATGAAAATAGTGTAAACGCTTCTAAAAGTCTCCATTATAATTATTTTTTTATCAATTATAATTAATTGTAATTGTAGGCTAATTACTATTAACTGTCAAATTGTGTGGTATAATGGTATTAATATTGTTTTAATATTTATAAACATATTTTATACTTTTAAAATACTTAATTGTTATTTAAACGTAGATATAAATATTGTCTGTCGATTGTTATTATGTAAAAATAGTACAAGTTCGACAGATTGATTTAGGTAAATAATATAATTGTATTTGTATTTTTTACAAAACTACTATATTTAATAGTTTAAATTTAATTTAAATGTTATACTTATTATGTAATTGGTAAAGTAAATTACAATTTTACGGG # Right flank : TAGTGCTTTATCTATAGGTTATAAAAATTATGTAATGGTTTATAATTTTAAAGTTATAATATGTTGAAAAGAAAGTAGCTTATAAGAAAAATACATTATCTTGTTATCATCAAGATAATGTATTAAAGATATAATGTATAGCATTCCGAGTCACGGTTAGATTATTAAGAAATCATAAATAAAAAATAATTTACATTCCGTTGACCTCCTTATTTTATCATAAATTTTTAAGAAAAAAAGTAAAAAAATAATTTATAAATTTATTTTTAGTATTTTATAAACCATATTTATTATTTATGATTGATTTTTGACAAAATTAATTATAAAATTTAGATATAGCATAAGAAAGGTGGTGAAAAAGTGTATAGTATCAAATTAGATTTTATTTTAGAAAATAATATTATTCCAGATAAGATTAATATCATAGTTGCAAGTTGGATCAAACATGCTTTACAAACAGATAATGAAATTTTATATGAAAAGTTATATGAATTGAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAATCTAACCATTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 147570-147275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000001.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 147569 30 100.0 37 .............................. TGCAGTCTGTATAAATCACTAAAATGTTCCATTTCGT 147502 30 100.0 36 .............................. GCAACCACAAAAGGTGAGATAATTGAATGGCAAACG 147436 30 90.0 36 ........AC.....A.............. GGTGTTGCCATGGAGTATAAACTTTTAGGTCTTGAA 147370 30 90.0 36 ........AC.....A.............. CGACCAGCATTTTGATAATTGGTAGAGTAGGACCCA 147304 30 83.3 0 ........AC.....A......C.C..... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 92.7 36 GTTTAATAGTAACATTAGATGTATTGAAAT # Left flank : AAATCACTAAAATGTTCCATTTCG # Right flank : ATTATGAACAATCCTATTAATTGTTTTAGGGGATTAACAAATGCCCTATAATTTTAAAAGTTTAAAATTAATATTAAAAAGTGAGAAAAGTAATTAAAATAAGATGTTTTTAGTTTAGAGATGTTATAAATACATCATTTTTAATACTAAAATGGGAAAGCAAAAATTAATTAAATACTAATTTGAAAAAATCTGATTTTGTCAACAGTCTGAAAACATATACATAAAAGTATATGTTTTTTCATTAAAAGAGTATGTTTTATATATATGTAAGTGCTATCATATTGGTGTCAAGAACTAAGATAAAAATATAAAGGAGAAGGTTATGAAATTATTAGAACCAATTAAAGTTGGAAAAATCACATTAAAAAACAGAATTATGTTTCCACCAATGACAACGGGATACGAAGAAAGAGATGGAACAATAGGAAAGCAAAGTTTTAATTTTTATAAGAGAATAGCTGAAGGGGGAGTAGCTTACATTGTTTTAGGTGATGTTG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAGTAACATTAGATGTATTGAAAT # Alternate repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 25031-25251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000032.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_32, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 25031 25 100.0 40 ......................... GTTACTTTATCCCCTCTATCATAGAAGGTATTTAATTCTG 25096 25 100.0 40 ......................... GTTACCTAAGCAGTTGCCGCTTTCCTTTCTGCAATTTTAT 25161 25 100.0 41 ......................... GTTACCATTGGTAATGCTGTAAACAGTGTCCCTAACATATT 25227 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 4 25 100.0 41 GTTGCACCTTATCTAATGAGGAATT # Left flank : AAGAAATACAAAGCATACTATGGAATAATTCCAGATGATATCAAAATCAAATTAATAAATGTTAATGCAAAAGATAAATATGTAACTAATTATAAAAATACATATATAACTGCTTGGCATGGTACTTATATGTTGCAGGGGAAAAAAGAATATTTAGAATTTTTATATTATGTTGGTTTAGGAGAAAAAACATCCCAGGGATTTGGCATGTTTGAAGTTATAGAGTAAATATTTTGCGGTCAATCTAAACCCTATATCCATCAAGACTTTTGGGTAATTTTATAATCATAAAATAACTAAAAATCATCAAAAACAAACAAAAAATACAGTCAATCTTTTCAAGATATTTATTAAAAACACAAAAAATGCTCAAACCCTATGATACATAACACTTATACACAAATAAATAATTTAGAGATTGACCGCAAAAAACACTCATAAAATGTTTAAAAATAGTTAAATTTATAGTAAGATATAAGAAATAGCTAGTAAATATAGTT # Right flank : TAACAAGTTATTCATTTAAAGAATTAGTGATAATTGTTTTATTTAAAATAATGTAGTAAGATAAAAGAGCGTAAATACGCTCTTTTGTTGTGGAGGAAGGAAATGGAGTTAAAAGTAGTAATATTTGATATGGATGGGTTGATGTTTGATACTGAACCGATTGGGGCAAAGTGTTTTAAAACAGCGGCTAAAAAGTATGGTTATATAGTTGATGATGAATTTCAGATGGGATTGATAGGGATGAATGTTCATGATCATGTTCTTAAAGTTAAGGCTAAGTTTGGTGATGATTATCCAGTATTTGAGATAAGAGATTTAGCAAAGAAGTTAAAAATGGAGTATTTTTATGAATATGGCTTACCGATCAAAAAGGGTTTGAAAGAGCTGGTAGCTTATTTAAAAGAAATGGGAATTAAAATTGCGGTGGCTTCGTCATCGTCAATTGATTTGATCAATGAGTATTTAGAGTTATCAAAGATGGAAAATGAGTTTGATTTTGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCTTATCTAATGAGGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 519-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000111.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 518 30 100.0 38 .............................. AACCACAAATGAAACAAACCCTTCTGAAATATGGCCAA 450 30 100.0 36 .............................. GAAACATGCATAGGTAGCTGGTTTCGCATAGTTGTT 384 30 100.0 36 .............................. TCATCATTTAAAAAATAGATGGATGGTGTTGGGATC 318 30 100.0 36 .............................. GATATTCACCGATACAAGTCATTTCAAACTGCGCGT 252 30 100.0 36 .............................. TGCGAAGAGTCGAGATAATTTTTAAAATTATCTCTC 186 30 100.0 36 .............................. ATTATACAATTTTAAAGTTAATTAAAATAATTATAA 120 30 100.0 35 .............................. TCCGCTAAGCGACGCATGTTAGCCGACACTTTATC 55 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTAATAGTAACATTAGATGTATTGAAAT # Left flank : AGTTGGGATGAGTCCAAGAGAGTATAAAAAAGTAATGAGTTTAAAAAATAGAATTTAAAGATAAAAATAGTATATATAGATTTCTTTAGATACTAAATTCCAGCATATAAAATTGTAAAATATCGATAAATATGATGGATATAAATTGATTAAAATAATTTTTGAAAGATAACCTTAGCATCGTTAATTTTATTAAAGAAATAATTAAAAAGCTATAAATAAAGAAGATAGTGTCAGTATAATTAAATCACAAAGTGAAAGTTCTTTTGATGAAGAGATATTAGGATGTTAAAAAGAAGAGAATACAGATAGTTTAATTATATAATTTTACCAGGTGAAATTTTTAATAAAATGTCTAAACCTCTTGTCAGAGTAAGGGTTCAGGAGAATATGATAGAAAATTATAAAAAGAAGAATTTAGCTGGTAAAAAAATAGAAAGTTGTTGATATATATAAGCTTTGAGGTATAATGGAAAATGTAAAGTGGCTAATTTACTAGG # Right flank : TTGCAGTCTGTATAAATCACTAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAGTAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 1945-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000012.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 1944 29 80.0 236 C...T.......A....A....-......A TGAACTAAGTTAGAAACTTTATTAATTTAAAGTTTCTTTTATTTATAACAAATAAGATTTATTTTACCAGCTACAAAATCTAATAAATTGCTTAAATCCGTTGGTAGAGTAAGAGTTTAAGAGATTCAAACAAGAAATTAATAAAAATATAATTTGACTGGTAAAAAAATAGAAAGTTGTTGATATATATAAGCTTTGAGGTATAATAGAAAATGAAAAGTGGCTAATTTACTAGG AT [1930] 1677 30 100.0 37 .............................. GTTACTACACCATATGGGGAAAACCAACTTTTTAGAA 1610 30 100.0 34 .............................. ATGAGAAGATGATCAATAAATTAAAGGCGGGTGC 1546 30 100.0 36 .............................. CGATTTACCTGCTGGCGGAACTGCTGGCAGGAGTAA 1480 30 100.0 36 .............................. GGAGCAAAAAAAATACAAGATTTGATAAACTAAAAC 1414 30 100.0 36 .............................. GCATTACCGTAAACCTTAGCATCACCGTAAACCTTA 1348 30 100.0 34 .............................. GGGGATGAAAAATTATGGCTTGGAGTAGGATATT 1284 30 100.0 34 .............................. GTTTTTGACATGTTTTTGACATGTTTTTGTTCAG 1220 30 100.0 36 .............................. TAAATTTCGATTGGCACCATGAGGGGTTTCCAAATG 1154 30 100.0 37 .............................. TTTTTTACAACTTATTTTTTATTGCGTGTCCTTTTCG 1087 30 100.0 36 .............................. AATAATGGAGGTGATGAATAATGAGTGGACTAATTG 1021 30 100.0 37 .............................. TGTTTCGTTATATATCTAAAGTTTCTGATTCTGACAT 954 30 100.0 35 .............................. TTTCGAATATCGTTATAATACATGCAATTAAGTTT 889 30 100.0 37 .............................. ATGCTCTTTTGGATTTGATATTGAAAGTGAAGAATTT 822 30 100.0 36 .............................. TAAAACGTGCTGTCAAACTGATAATCTGGCATTAAT 756 30 100.0 36 .............................. TATCTAATTAATTCACCTTCTTTGATTGCTAACACG 690 30 100.0 36 .............................. CTTTTTTGCGCCACGTTAATATCGGCATTATAATCA 624 30 100.0 36 .............................. TAAAATCCTCCTTTTAAAAAGGATAACATTTTTTTA 558 30 100.0 34 .............................. GAATTCAAAGGACCAGAAACATAATTACCTTCTA 494 30 100.0 36 .............................. GGACGTTGCTGACGAGCGTCCGGAGAAGTAACACCG 428 30 100.0 36 .............................. GTGATAGACTGCATCTGATTAAAAAGACCTGAAATA 362 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 22 30 99.1 45 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : CTCAAGTTTCTATGAATTGTGTTGATATTGGATTACCACAATTAGCAATGCATTCTTCATATGAAACAGCAGGAATCAAAGATACATATTATATGATCAAAGTTATGGAAGAATTCTTTAATAGTCATATCGAAGAAACAAGTGCACATGAATTAAAGGTTACTAAGTAATGCGAAAAAATAATTTAAAGAAGGAAGTACTTGAAAAATATGTAATATCGGGATTATGGCAGACGATGTGTGGTTATATAGTTTTATTATTTATAAAAGAACTATTAACAAACAATTATTTAATTAACTTTTCTATTGATGTGTTAGTTGCAATCATTGCTTTTTATATAACATTAAATAATTTGATTAATCAATATAAATTAATTAAAGAGAACGATATTTCAATGAAACCATTTTATTTTCAAATCTTTGGTTTTATCTTAGGGTTATTTATATCTATTATGACTTTAAAAACTCCTTTTGATATTTCTTTTGTAATCCTTGTAGTTA # Right flank : TCTGATTTCAGTAATAACACCACAACAGAATTTGATTAATCAATCTCGGTTGATTAAAGAAAATTATATTTTGATAAAATCATTTTTTAGATCTTTGGACTTTTGGTAGTATTATTTATTGTAATTATGACTCTAAAATAATCCTTTTGATATTTTTTGTAATTCTTGTAGTTACTTTTATAATTAGTAAAAAGATATTTGAAAAAGAATTAACCTAGAAACTTTATTTCATTAAAGTTTTATTTTTTTTGGATATTAAATTATTGTTTTAATAATCATGTTAACGTTCAGCGAAAATGTCACCAAAAATGAAGAAGGGTTCAACTAGTGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 12062-11242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKR010000012.1 [Clostridium] saccharogumia strain DFI.6.15 HCJBCHAE_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 12061 30 100.0 36 .............................. TCGAATATAGATAAAATTAACACCGCGTACTACATT 11995 30 100.0 37 .............................. TGGTACTTATCCATGAAATGTTTATGCTCGCTACGAC 11928 30 100.0 36 .............................. TACTCCAAGGGAGCTTATAACATTGTAACAGATATG 11862 30 100.0 36 .............................. TCTACTTTTAAATACTTTTGCGTTTATATTAAAAAA 11796 30 100.0 36 .............................. ATGCAATCATAAACTGTGTGCCCTAGACTTTGCAAT 11730 30 100.0 37 .............................. ATCGATACAGTGTTAGCGCATCATTAGCTTCCCCCCA 11663 30 100.0 36 .............................. TGTTTAGAACAATCAAATTTATATCTATATTTATAC 11597 30 100.0 36 .............................. AATTCATATTGAATATAGGTTTCGCCATTATACGGT 11531 30 100.0 36 .............................. CACATGCAGCTATGCAGAAATTCCATCATGGAATAA 11465 30 100.0 38 .............................. ATATCTTCAAAATATTGAAGTGACCTTGCTACTTCCCT 11397 30 100.0 35 .............................. ATAACTTGTGCAGCATAATTACCTGAAACTGGAGT 11332 30 76.7 31 .........T.....TG.......AAG.T. TTTTAACAGTATAACTAGTTCTTATATTGGA 11271 30 80.0 0 ........T......G.A......AA...C | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 96.7 36 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : AGGCAGTAAGTGATATGGTTGAACATTCGATTATAAGTATTGTGGCATCAAAAGAGGGTAAGGAAAATAAGTTTAGAGTTTGTTAAAAAAATTAATTTTGAATAATTTATGTTTTTTGTTACAAACTATTATTGGGGTGATAATATTGAAGAAAAACAGAAAACAAACTAAATCAAATGAAACTCAAAAAACTGCAGTCAATAATCAATGGACAAATAATAATACAAAATATTATCCAGATAATAGGGAACGTCAAGATGGTCCAGGTGGTAATTAAGAAACTTTATTAATTTAAAGTTTCTTTTATTTATAACAAATAAGATTTATTTTACCAGCTACAAAATTTAATAAATTGCTTAAATCCGTTGCTAGAGTAAGAGTTTAAGGGATTCAAACAAGAAATTAATAAAAATATAATTTGGCTGGTAAAAAACAGAAAGTTGTTGATATATATAGGTTTTGAGGTATAATAGAAAATGAAAAGTGGCTAATTTACTAGG # Right flank : ATTAATATTCTAAGATAATATTTTAAGAAAAAGTGTAAAATGATAACGTTTTCAATAAAAGTGTGATAAAATATATGTATTACAGCTAATGATAAGGATAATTCTAAGTCAAAGGGTGGACGATATTTTATTATGTTTAACCATTAGTATGTTTTCTAATGGTTTTTTATTTAAGGAGGCAAGATGGATAGTAGAATTGCGATAATTGGTGTATTTGTTTATGAATTAGAAAGTGCAAATAAAATTAATAATCTTTTACATGAGTATAGTCAATATATTATTGGACGTATGGGAATTCCATATAAAGATAAGAAAGTTTCTGTTATTTCGGTTATTGTAGATGGTCCTAATGATGTTATCGGAGCTCTTACTGGTAAGATTGGAATGATTAAAGGAGTTAGTGTTAAAACACTATATTCAAAAGTATAAAATGAATAACATTGAATTGATTGATAAACTAAATCATGAAGGTGAATTAGATTTTGATGAATTTAAGCAAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //