Array 1 361704-362769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSX01000001.1 Salmonella enterica strain CVM 43832 43832_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 361704 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361765 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361826 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361887 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361948 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362009 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362070 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362131 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362192 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362253 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362314 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362375 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362436 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362497 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362558 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362619 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362680 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362741 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162330-160853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSX01000032.1 Salmonella enterica strain CVM 43832 43832_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162329 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162268 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162206 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162145 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162084 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162023 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161962 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161901 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161840 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161779 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161718 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161657 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161596 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161534 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161431 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161370 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161309 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161248 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161187 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161126 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161065 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161004 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160943 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160882 29 96.6 0 A............................ | A [160855] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179038-178462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSX01000032.1 Salmonella enterica strain CVM 43832 43832_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179037 27 93.1 33 --........................... GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178977 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178916 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178855 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178794 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178733 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178672 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178611 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178550 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178489 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //