Array 1 92594-89720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUV010000007.1 Streptococcus suis strain ZG1004 ZG1004_scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 92593 36 100.0 30 .................................... TAACGCTATTGACTTCATGCGAAATTGGGA 92527 36 100.0 30 .................................... TGGAAGAAATGCGGAAACGCAAGCGTAAGT 92461 36 100.0 30 .................................... ACTGGACAGATCCAACATTGCCAAAAGAAT 92395 36 100.0 29 .................................... GCAAAACGAAAACTGAAAGAGTACCCTCG 92330 36 100.0 30 .................................... CTCCCCTAAATATTATTCGGAAGAAATAAC 92264 36 100.0 30 .................................... GTCGCGGTTGTAGTGTCCGTGATAGAGTGC 92198 36 100.0 30 .................................... CACGGCAAGAGCGGTATCGAAGACTTTGGT 92132 36 100.0 30 .................................... AAAATTCAATCGTGTTCCATCTACTCCTGT 92066 36 100.0 30 .................................... CTGTTTCCATTAAGCGATTATAAACATACC 92000 36 100.0 30 .................................... TACACTTTTGTTGTCAACCATGACAAAATA 91934 36 100.0 30 .................................... GTTTTCTGGTACAATGTAAACGGTCTTAGT 91868 36 100.0 30 .................................... ATAAAATCTGCAAGTTTATCCTATCTATAG 91802 36 100.0 31 .................................... TTAACCATCAACGATCTTTTGGCACAACTTT 91735 36 100.0 30 .................................... ATCATTTTTTACCAACATTATACCATAGTA 91669 36 100.0 30 .................................... TCAAATGGTCCAAAATGCCAAGACTGACCT 91603 36 100.0 30 .................................... ATTGCTTGAATTATCCGTATCTTACCCGAA 91537 36 100.0 30 .................................... TCCTTTTTTTAGCGGAACGTGGTATCTGTT 91471 36 100.0 30 .................................... AGTAGAATTCTATACCATTTTGAAAGAAAA 91405 36 100.0 30 .................................... TCGAAATGCTGATGAGGTATCAATCAGTGC 91339 36 100.0 30 .................................... GAAGAATCAAGCAGATGAAGTAACATTTGA 91273 36 100.0 30 .................................... TTTTTTGGGAACGGTGCTATAATCTACATA 91207 36 100.0 30 .................................... GATGCCTATTACGATTATTCTCAAGCGAGA 91141 36 100.0 30 .................................... TTGAAGATCGAATGACAATCATGGGTGTTA 91075 36 100.0 30 .................................... GAACCTCAGAGCGCTTTGCGTGGTTGGGGC 91009 36 100.0 30 .................................... ATATCAGCCAGGAAGAATGGGCAGAATTAT 90943 36 100.0 30 .................................... CAATGTCTTTAGCGGTTTCTCTTGCAAGAG 90877 36 100.0 30 .................................... ATACTGGAGAAGTGAAAGAAGAAACACCAG 90811 36 100.0 30 .................................... CAAACCGCTTGGCATGATGCGTAAGCATTC 90745 36 100.0 30 .................................... GAGTCATATAGCTAGTTGAATGGCCGAGAG 90679 36 100.0 30 .................................... GCTTCAATTTACTTGTCACAAATGACAGGC 90613 36 100.0 30 .................................... TACTGCGTGTCGCATACGTCTACCTTTTTT 90547 36 100.0 30 .................................... ATTCTGTTATCTGGTTAGATAGTGATAAAT 90481 36 100.0 30 .................................... TGACTCATGCACAGACATCCTTGAACACTA 90415 36 100.0 30 .................................... AATGCAAATTGAATATCTTCAAATTGCACC 90349 36 100.0 30 .................................... TTCGCTCACGCAACCGTAAACGATTATTCA 90283 36 100.0 30 .................................... TCTCTGGTTCTACCAAACTGGCTGAGGCTA 90217 36 100.0 30 .................................... TTTTCCAACTATTATCAACGGAATGCATAT 90151 36 100.0 30 .................................... TACCTGACCTTGATATGCTAAAAGAAGTTG 90085 36 100.0 30 .................................... TAACTTATGAAGAAGCCTTGTGGCTAACCT 90019 36 100.0 30 .................................... ACATTGCCATTAAAGAATATATCTTCACGT 89953 36 100.0 30 .................................... TGTCGTATTGAAGCAATGGTCCGGTGTGGT 89887 36 97.2 30 ..........................T......... AAGGGTATATAGACCACAAGCAAGTTCATC 89821 36 97.2 30 ..........................T......... ATCGGGTTGTGATGGAAAAAATCCCAGAAC 89755 35 88.9 0 .........................A..A-.....G | T [89722] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTAAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATACAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGTGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAAATCTGCATTTATATCTTTGTTTTAATTTTTTATAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCTATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //