Array 1 788257-787985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027017.1 Treponema medium strain T19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================== ================== 788256 25 100.0 74 ......................... ATTCTGCAACATCATGAGCGACCTGCACATATTCGCCGCTATTAAACTCGAAAACCATTGTCATCTGAATACCT 788157 25 96.0 50 ........................T CATAATAATCCTCCTATAGATTATCCGTGTAAGTTATTACTCTAAAAATC 788082 25 100.0 48 ......................... GCATTTCGACAAGCTGAGAAGGCGTGTAGTAATCCCACTCTAAAAATC 788009 25 84.0 0 ...................CTCT.. | ========== ====== ====== ====== ========================= ========================================================================== ================== 4 25 95.0 58 AGACCTGCTTTAAGGGATTAAGACA # Left flank : TCAGACCTGCTGCGTGAAACCAGTGGCGTCCGTGCCGCTACCGAAACGGAGTTGCGCAAAAAACATCACTGCTCAGCTTTTTATTCAGAACTAAGTTTTGGAACCAAGGCGGGTTCTTAGGGCAGAGCCATAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACTTTCTTAGACCTGTTTTAAGGGATTCTGTCAAAGAATGTACGTCCTGTACATTCTTTGACGGTGAGTTTTGAGCAAGGCTCAAAACATCACTTCTGCGTGGAACCACGCTCGTCCTTGGGCGTTCTGAAACGGAGTTACGCAAAAAGCATCACGGCTCAACTTTTTATTCAGAACCAAGTTATGGAACCAAGACGGGTTCTTAGGGCAACGCCCTAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACCTTCTT # Right flank : AGAGTGTACCTCCTTGTACACTCTTGAGGGCGAGTTTTTGCTCAATACCGCCATGGATGGCGGGCATATCAAACAGAAACGATGTTTTACAAAAATTCCATTTTTGTGAAACTTGCAAGGTAATGAGCAACACGGACGTTGCACATTACCGTAACCTCGCTACTGCGTGGAACCACGCCCGTCCTTGGGCGTTCTGAAGCAGAATTATGCTCACACGCTATGGGCGTTGAAGTAAATATATGGAGGAATTTATGTCTGAAAAATTTGATGAAAAGAAAAAAGTTAAAGCAAGTGAAAAATTTGAAGGCTTCAAATCATATCAATATACAGATAATGATTTTGAAAAAGTATTTAAAAATGAAGAAAAGATTAAAGAAAAAGTAAAAAAAGGAAATTTTGGAGAATATGCTGATTATATACCACTTTTCTTTGAAATGTTGAAAGATGTTTTTTCTGGAAAATATAAAGAAGTTCCTGTAGGTGCTATTGCTGCAATAATA # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGACCTGCTTTAAGGGATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 789056-788804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027017.1 Treponema medium strain T19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 789055 33 100.0 42 ................................. GAACTTATCAAACTCATCGTTGTAAACTGTATCATCATGGGA 788980 33 100.0 38 ................................. GAACCGTCTACGACTTGGATTGACTTGGAGCTTATTCT 788909 33 93.9 40 ....G....A....................... TGTTAAGCCCTTTCCGACGATATTTGGAAGAAGATTTTCT 788836 33 90.9 0 .........A......AC............... | ========== ====== ====== ====== ================================= ========================================== ================== 4 33 96.2 40 CTAAAAATCTGACCTGCTTTAAGGGATTAAGAC # Left flank : ACAACACTCCCACAAACACGAGCATCAGTATATCGACGAGATTGTGTTTCTTGCATCTTTCGATTCTTTCGTCTTTAATGTTCTCAAATGATTCTTGTAATGTCATTGTTCCACCCCAAGAATATTTTACCATCTTTTATACCGTGTGAGCTACTGTTTTTTTGACACTATTTATAATGCGGAATCCCTGTCCCACATACCAGCCATATTTACCCTAGTTTTTTTCTATTTTTTCTGCTTGCCCTTTCTAAAGGAGGTGTGATAGAATAAAAGCATAGGTTTTAACTGCTTTTTGACAAAATCGCAAACCTCCAAAAAGTGTCCAAAACCCGCTTTTTAGGGGTAGGTTTGCGAAAATATATAAGTCTTTATTATTACAATGATTACAGGATTCATTATATCTATTTTTTCTATTTTTTTAGAGATCGCCCCCGTTTTACCAGAGGTTTTCGAAAACATCTTTCTAAGTCGATACCTCACCGAGCCTTACCCCACGCGCT # Right flank : CTTGCAAGCCTCCAGCTCTTAAAGCGCTTTTTTGCTTCCTCTAAAAATCAGACCTGCTGCGTGAAACCAGTGGCGTCCGTGCCGCTACCGAAACGGAGTTGCGCAAAAAACATCACTGCTCAGCTTTTTATTCAGAACTAAGTTTTGGAACCAAGGCGGGTTCTTAGGGCAGAGCCATAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACTTTCTTAGACCTGTTTTAAGGGATTCTGTCAAAGAATGTACGTCCTGTACATTCTTTGACGGTGAGTTTTGAGCAAGGCTCAAAACATCACTTCTGCGTGGAACCACGCTCGTCCTTGGGCGTTCTGAAACGGAGTTACGCAAAAAGCATCACGGCTCAACTTTTTATTCAGAACCAAGTTATGGAACCAAGACGGGTTCTTAGGGCAACGCCCTAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAATCTGACCTGCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 866348-866969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027017.1 Treponema medium strain T19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 866348 35 100.0 36 ................................... TAATATAACCCCCTATAGTGTTTGTCTTATAGCTAT 866419 35 100.0 39 ................................... TAGATATTGCTGCCAGAAGCTTTTTATAGATTCGCCTCA 866493 35 100.0 37 ................................... CATACGAAAATAAGGTTTGTTACATTTTGTCCTACTA 866565 35 100.0 38 ................................... AAATTTTATATTTCCTAATGTTCCTTTTGTTGAATAAA 866638 35 100.0 39 ................................... TTTTCGTCGCCGTTCAGCTTCTTGATGTGCTTTTTTTGC 866712 35 100.0 41 ................................... AGGAATAACGCAGACGTCAACATCGTCATTGTTTAGAAAGG 866788 35 100.0 39 ................................... CGATAAGATAGTTGCGAACTCCTCTTGAAAGATATCCTA 866862 35 100.0 38 ................................... AAAATTCGAAGACGGTTTTACCTTTCAACATTTTATCG 866935 35 88.6 0 ..............................CTCT. | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 98.7 38 CTCTAAAAATCAGACCTGCTTTAAGGGATTAAGAC # Left flank : TTCCTACATTGGACAAAATATACACATCTGACATATATCTTTAGTATAGCACAGGCTATTGCTGCTGTCATTGAGTATTTTATTTGCATAGAGGCGACATTCCTTACGCTATTCCGCACCATAGTATAGCAATGAGCAAACATCTATATGGATACTTTGTGTGTATGTGTATTAACCTCCTCTATTTTCACACGGCTGGCGAAAAAACTCTTTAAACAATAATTTCTGTTTTTTCTGCTTGCCCTTTCTAAAGGAGGTGTGATAGAATAAAGACATAGGTTTTAACTGCTTTTTGACAAAATCGCAAACCTCTAAAAAGTGCCCAAAACCCGCTTTTTAGGGGTAGGTTTGCGAAAATATATAAGTCTTTATTATCACAATGATTACAGGATTCATTATGTCTATTTTTTCTATTTTTTTAGGGATCGCCCTCGTTTTACCAGAGGTTTTCGAAAACATCTTTTTAAGTCAATACCTCACCAATCCTTACCCCGCGCGCT # Right flank : CAAGAGTGTACCTCCTTGTACACTCTTGAGGGCGAGTTTTTGCCAACGCAAAAACTCGCTGCTGCGTCGAACCACGCCCATCCGTGGGCGTTCTGAAACGGAGTTGCGCAAAAAGAATCACGGCTCAGCTTTTTTTAGAACAAACGACTGGAACCAAGGCGGGTTCCGCGTGGAACCAGCGGTGTCCGTGCCGCTACTGAAACGGAGCTGCGGAGAGGGAAAAGTTGGTAAGAAAAACTGGAAGGTTTGTCTTACATACAACAACATTCTGCTTTGAGGGGTAATTGTAAAGAGGGTATACAGGATATGCCCCCTCTTTACCCGTCATTTTTCTTTTTGGGGTTATAGGGGGCTTTTTCTTTTTATCGGAAAAAAAGAAAAAATCCCCTAACCTTCTTAGACCTGCTTTAAGGGATTAAGACAGCTCAAGGATGTACGTCCTTGTACATCCTTGAGCACGAGTTTTTGCGGGAGCAAAAACTCGCTGCTGCGTCGAACCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAAAAATCAGACCTGCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //