Array 1 141907-142715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWP010000003.1 Listeria seeligeri strain FSL L7-0681 NODE_3_length_221481_cov_15.509887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 141907 29 100.0 36 ............................. ACAGGTCAAGAGTATATGATGCCAGAGTTAGGTTTA 141972 29 100.0 35 ............................. TAATACCACTTAGACAAGTTTTCACAAGTAAAGTC 142036 29 100.0 36 ............................. GCATTAATATTTACGTGATTATAGTCAATAGTGAAC 142101 29 100.0 36 ............................. ACTGCTTGCGTTTTTCAACAACTCGACATGGCAAAG 142166 29 100.0 37 ............................. TGACACGTGCAGCAACTGCTTTAAAGTCCGGATTTTC 142232 29 100.0 36 ............................. AACCTATCCGGGGCAGTGGTTAACAATGTGTTTGTC 142297 29 100.0 35 ............................. CTAACTCTTGAATAGCGCTCTGGAACTCTTCGTTG 142361 29 100.0 38 ............................. TGTGTAAACGGAGAAACGTTTGAAGTAGAGTTATTAAA 142428 29 100.0 35 ............................. TTTTCAACAATTTCACGTAAATCTTTTTTATAAAT 142492 29 100.0 35 ............................. GCTTGCTGAACGTTGTAATATAGCGTTCAAGCAAC 142556 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 142621 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 142687 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTTGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAATGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 148938-150263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWP010000003.1 Listeria seeligeri strain FSL L7-0681 NODE_3_length_221481_cov_15.509887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 148938 29 100.0 36 ............................. AACGCATCGAGCGCCCACTTTGCTTGTTCATATACT 149003 29 100.0 37 ............................. GAATACGCATTCGTTAAACACTTTTCAAATTCTCTTT 149069 29 100.0 37 ............................. TATGGACTCAGATAGATACTTTGTAAACACGATAGTT 149135 29 100.0 35 ............................. AAATATCCACAAAACGAATGTAGTTATGAATAATC 149199 29 100.0 36 ............................. TTAGAAAATTATCGAGCAAATGTTTCTGATGACAGT 149264 29 100.0 38 ............................. CCAGCAAGGCCATATTAATGGAAATTCAAACAATTGCA 149331 29 100.0 35 ............................. TCGTTATTGATTAGAACATAAAACTGTTCTCCAGC 149395 29 100.0 34 ............................. CCTTCTAATTGGAATTTGAACATACCATCGTTAG 149458 29 96.6 36 ......................A...... TCATAAATTTGGGGGCGGTTACGACAACTGTCGGAG 149523 29 100.0 38 ............................. CTTACTACAGCAGGCGAATACGACGAGGATAATTTAAA 149590 29 100.0 34 ............................. GAAGGTCTTTTTGACTTATTTAGTAATATGTTTC 149653 29 100.0 36 ............................. ATTTAGAAATCAGTGTGCATTTAAACGCAGGCGGGG 149718 29 100.0 36 ............................. ACTTTTAACGACGTTCGAGCAGGTCGAAGCAAAATA 149783 29 100.0 36 ............................. TTTGTATATTGCGTAACGGGGTACATAACTTCTTTG 149848 29 100.0 36 ............................. CGCATTTTTATGTCTAGTGAAAGTTCCTTAATCAAC 149913 29 100.0 35 ............................. TCAATCAAAACAATTGATTCATGGAATGGTTATGT 149977 29 96.6 35 ............C................ GAGGCATCTGCTAGTAAAGTGAAAAAAGAATTTAA 150041 29 96.6 34 ............C................ ACTTGACCGTTATAGCTTGCAAATAGGGCTTTTC 150104 29 96.6 37 .......G..................... TGGCATAATGCCCATTGACCTTGTAAGGTTGGTCAAG 150170 29 100.0 35 ............................. ATGTATTTCGAACAACTTTTATTAGGGTATAAAAC 150234 29 89.7 0 .............C..A...........G | T [150260] ========== ====== ====== ====== ============================= ====================================== ================== 21 29 98.9 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATACAGCAAATGTTGAAAAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 158868-160063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWP010000003.1 Listeria seeligeri strain FSL L7-0681 NODE_3_length_221481_cov_15.509887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 158868 29 100.0 36 ............................. AACATCAGCATGACCAATAGCGTTGAACTTGTTATC 158933 29 100.0 36 ............................. ATATTCAAGGGCTTTTGGAGTAGTTACTTTGGTGAT 158998 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 159063 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 159129 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 159192 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 159256 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 159321 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 159384 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 159450 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 159516 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 159580 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 159645 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 159710 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 159776 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 159840 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 159905 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 159970 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 160035 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 97.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTTGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGGAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //