Array 1 13861-12033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCG01000002.1 Vibrio navarrensis strain ATCC 51183 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13860 28 100.0 32 ............................ AAGAAGTTAAAACGGTCCAGACCGGACAACTG 13800 28 100.0 32 ............................ TTGGGTGATCAGCACTGAATGATCATCATGCC 13740 28 100.0 32 ............................ TTGGTTCTTGCTCGATACAAGCCGTCCGCTTA 13680 28 100.0 32 ............................ ATCGATGGCGACCCGTACAAGATGATTTCTCT 13620 28 100.0 32 ............................ ATCAGGAATGCAAGAAATCATGGGCGCGTTGT 13560 28 100.0 32 ............................ AGTATGACGGCACCGCTGAACGTTACGTGAAA 13500 28 100.0 32 ............................ TGAATAACCGTTAGCTGGCGCGCAAGCGTATA 13440 28 100.0 32 ............................ TGAATAACCGTTAGCTGGCGCGCAAGCGTATA 13380 28 100.0 31 ............................ TGCTACGGAAACGTAGCGGGAATGTGCGAAC 13321 28 100.0 32 ............................ TGACTTATCATCAGCGAGTTTGCATTAAGCTC 13261 28 100.0 32 ............................ AACCACAACGAGAGCCCCACTGCAAAGCATTA 13201 28 100.0 32 ............................ GTTTCTGTCATCCGGCACGCGGCCATCGGTTC 13141 28 100.0 33 ............................ TTTTTCTGCCAATCTCTCAGCGGAAACCTTGAT 13080 28 100.0 32 ............................ GTTACAGCGTTTCGCGCTGCGACCAATCAAAT 13020 28 100.0 32 ............................ ATCAAGCCTACCCGCCTCATCCTGCCTAACTT 12960 28 100.0 32 ............................ TAATAAGAAATAAAAACGCTAAGGTTTTTTGG 12900 28 100.0 32 ............................ TGAAAAGCCTTGTGCCAATGAACGCTTGCATT 12840 28 100.0 32 ............................ TCTTGCCGCTATTCGTGATTTTTATTTTTAAC 12780 28 100.0 32 ............................ ACTTCGCGCATCTTTTCGTCAGTGTCGCACAT 12720 28 100.0 32 ............................ TATCAGCCATGCGCCTTGGCATGGATGCAAAA 12660 28 100.0 32 ............................ TCATCAGCAATCGCACGAGCTTTTTTACCGCC 12600 28 100.0 32 ............................ CTAACCCGTGCTATTGAAGCCGCCAAGTTGTA 12540 28 100.0 32 ............................ TGGGGGTGTGTGAAAGGACATAGCACACGCCA 12480 28 100.0 32 ............................ GATTTAAGCGTGTGTTTGATGTAGGTCCAGTT 12420 28 100.0 32 ............................ TGAATATTTCAAGACTAAGCATGAAATGTACT 12360 28 100.0 32 ............................ ACTCTTTATCAGGCGCTTCGGGAGTGTCTGCC 12300 28 100.0 32 ............................ AAAGGTGGTCGCGGCGCTTTAGCTGGCGCTAT 12240 28 100.0 32 ............................ TTAACCCGCAGCGGCTCATTTACCGCTTGTCT 12180 28 100.0 32 ............................ AAGTCCCATTTTGACACCAGCGGTATAAGCTC 12120 28 100.0 32 ............................ AATACTTCCAGCTCTAAACTTTGTCATGAATG 12060 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAGCCAAGAGCAGCAAAATAATCCTTTACATGGTTTAACCTTAGAGAAAATTCTCGTTCGTTTACAAGAGCACTACGGTTGGGAAGGGTTAGACAGAGAAATTAAAATTAACTGTTTTTACAGCAATCCATCAATCAAATCTTCTCTTAAGTTTTTGCGTCGTACGCAGTGGGCGAGAGACAAGGTTGAGGCTTTGTATATAGATACATTTTGCCGTTAAGAACATTTGCATAACAAGGCGTTCAAGAGGGACTTGGCACGCGTGGCATTTTTGGTTTGCGTTGGTTTTAGTGGTTAAGTTGTCATGCGGTTACTTTTGTATTGCGTGCCTGCGCCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAGCCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTTAGTCTGATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTGTTCTTTTTTGTGGCGATTGAAAGTTGAACGATGCTTATGCGTTTTTGTCCGGCTCAGCTCTGATAGATTGTGTTCGTAAAAGGTTCAATTATCGCTGAAAGGTCTCTTCCTTTGGTGTTGTTGACCCATTGATTCCGCAGGCTAATTCGCTTCAATTTATTTGGGATCTTATTTGCACCAATGATTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTGGCTGCAAGCGATAGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12211-9601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCG01000001.1 Vibrio navarrensis strain ATCC 51183 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12210 28 100.0 32 ............................ TTTTGGCTTGAATGGGCCCTTGTAAATCTCGG 12150 28 100.0 32 ............................ ATGCCAAGCACAAAAACAGGTTTAGCCATTTG 12090 28 100.0 33 ............................ CTAGCGGGGGCGTTTTTCTTCGGGAAGTTACGA 12029 28 100.0 32 ............................ AGAAAAGGCGATATCGAAAATAGGCTGGGCTA 11969 28 100.0 32 ............................ TATCCTGATGAAAATGGCGCTTTCAGCTAAGT 11909 28 100.0 32 ............................ CTGCGGGCATTATATGGGCACGTTTAGCACTA 11849 28 100.0 32 ............................ ACCGACTGAGCTCGGGCGCGACAATCTGAGGG 11789 28 100.0 32 ............................ ATGAGTGTCTAGGGTGGATGCGACCAAATCAT 11729 28 100.0 32 ............................ CTGCTCATCGAAACTTTCACAAGCATCATAGC 11669 28 100.0 32 ............................ AATCGTGAAGCGACCAAGGCGGACGACGAGAA 11609 28 100.0 32 ............................ AACAGAAAGCAACACAAGAACGCCACTATGAA 11549 28 100.0 32 ............................ CTACGGCTCCGCCTACCCGCTGGACAACTCAC 11489 28 100.0 32 ............................ ACATTGGCACATACCGTTAGTGACAGCCGTTT 11429 28 100.0 32 ............................ AGAGTTACCAATCCATTAAAGGGGGGAATTTT 11369 28 100.0 32 ............................ AATAGCACTCCCACTCTTAAGAGTAAAATACC 11309 28 100.0 32 ............................ TGCTCAAAGGCACGTTCTTGCTCTGCCACCGA 11249 28 100.0 32 ............................ AATCTGGTACTTGCTCACAACAGGATTACTTA 11189 28 100.0 32 ............................ AAGCCAGCCTAACCGCTGGCTGTTTATCGCTT 11129 28 100.0 32 ............................ TTGGTCGGCTTGGTGACGATCCAACTGTAAGA 11069 28 100.0 32 ............................ ATTATACCGGCGGGTAAGCAAGTTACCCAGGA 11009 28 100.0 32 ............................ TCTCTGAATCCAGCCAATATCGTCACTTGCTC 10949 28 100.0 33 ............................ AATATGGATGATAGCGAGTTTGAGCAAGTCTAT 10888 28 100.0 32 ............................ TGTTAGCCACTCCAGACCGCTTTCAAAATACG 10828 28 100.0 32 ............................ CAGATAATGAGGCTATGATATTTGCGTGTTTA 10768 28 100.0 32 ............................ TAGCAGGTCCTCATTGCGATTCGGCCACCAAA 10708 28 100.0 32 ............................ AGTAAAATTGACCGCCTAGCACGCCAGTGCAA 10648 28 100.0 32 ............................ GACAATTCCGCCGTGAACAAAACCTCCGGCGT 10588 28 100.0 32 ............................ GTCAAGTTACTCAGCAATTACGACGACACAGA 10528 28 100.0 32 ............................ CCGCTGCGCTGAGCTGCGGCAGTCCGCGTTCT 10468 28 100.0 32 ............................ CAACGAAAAATTTACATCGGTTGCGTTTTTTG 10408 28 100.0 32 ............................ ACCATAGGCGCGGAGGTATCGCGGTTTATCAA 10348 28 100.0 32 ............................ TAGCGCAGCGGATTGATCTCTGAACTCATCAA 10288 28 100.0 32 ............................ TCGCCTGAGGGGATTTCTTTATCTCCGCAAAT 10228 28 100.0 32 ............................ CCGATCAATTTAAAGCCATGAGTTTTGCTTAC 10168 28 100.0 32 ............................ TTGATGCAATGAGTGCAGAAGAATTCACTCGC 10108 28 100.0 32 ............................ GCTACAATCTTTGCGCATGTCTTTTGCAGCTC 10048 28 100.0 32 ............................ TGCTCAGTGTCGAACACTCGCACCCATGGCCA 9988 28 100.0 32 ............................ ATGCGAGCTAGGCGTAAACCCATTTGTTAACC 9928 28 100.0 32 ............................ TTGCCGGAGTCGGCGGAAAAACCGTCGAAGAA 9868 28 100.0 32 ............................ ACGCTGAAAGCTTCCACAAAGTCCGTCAACTT 9808 28 100.0 32 ............................ GTTTAGCACTTTAGTGCAGTCGATCGGCTCTA 9748 28 100.0 32 ............................ TCGACATGCCAGCGACCGATGCCAACGCCAGT 9688 28 100.0 32 ............................ ATGCAGAGAGTGCAAAAAGGAAGTGGCTACTG 9628 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGTGTAACTTACGTAAGTTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAACGGGATATGCAGCAAAAAGCAGCCCTATGGGCAGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCACCAGACAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTACCGCATTTTTAAAATGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATGGTTGCAACAGGCGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGCTTTATTCTATT # Right flank : ACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAGCATCAATTCTAATCTAATCATAGCAATCGAGCATTTTAGATGCGCCCGTACCCCAAGCCGTACCCAGAGCGATTTTTGCTACAATTAAAAACCGTTTTAACCTTTATTTAATGCGCTCTAACATCACACCCGCTTCCATGTGATGGGTGTAAGGGAACTGGTCAAACAGAGCGAAACGGGTAATGGTGTGGGTTTCGCTCAGGATTTCGAGGTTCTCGAGCAGGGTATCTGGGTTGCAGGAGATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCTACATCCATACCTGCGCGTGGAGGGTCGACAAAAATCGTATTGCAGTTGTAGCTCTTCAAATCTACGCCCGCATCTTTAAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTAAACTCTTCCGCTGACATACGGATGATCTGTACGTTCTCAATTTTGTTGGCGGCAATGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1238174-1240042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCG01000001.1 Vibrio navarrensis strain ATCC 51183 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1238174 32 100.0 34 ................................ CAAGCTCATACTGCGAGGCTAATTCAGCGAATCA 1238240 32 100.0 33 ................................ ACGTCTCCGCTGAGCTTGTCCATGTTGCGCGAC 1238305 32 100.0 33 ................................ ACCAGCGCCACCGCTGATGGTGGTACCGTGTTG 1238370 32 100.0 33 ................................ TGGGAAAAAGTCAGGCAAATGGGCTCGATAACC 1238435 32 100.0 33 ................................ TTTATTGTCCGCTTAACGTAGTAAAGCTGAGAG 1238500 32 100.0 33 ................................ TCTTCATCGCTTAGTCCTTTCTGATTTGTGACT 1238565 32 100.0 33 ................................ AAGGTCATCGGTGGTTTTGAGCGCTTTGCTAAC 1238630 32 100.0 34 ................................ TGCCTAGACAGAGCAAAGCAGTTTGTTGCCCCTC 1238696 32 100.0 33 ................................ CCGGAACCAATAAGAAGGCTGATTACAAATTTT 1238761 32 100.0 33 ................................ TTACCCAATGGTTTTCGTGTTGGCCACGGCGAC 1238826 32 100.0 34 ................................ CTTTGCGCATGAAGCGACATTGGCCGATGTGGAC 1238892 32 100.0 34 ................................ TCTCGAAGCCGTGATTCTCAATCTCAAGAGTCTC 1238958 32 100.0 34 ................................ TAAGCACCTTACGCTCAAGAGCCTTATTCGCCTT 1239024 32 100.0 34 ................................ TCTCGAAGCCGTGATTCTCAATCTCAAGAGTCTC 1239090 32 100.0 33 ................................ CAGTGCAGAAAGAAAGGATGTCATGGCCGCTGG 1239155 32 100.0 35 ................................ ATTAGATCGAGCATCACTTGCCCTTGTCCCGCCAT 1239222 32 100.0 33 ................................ TGCGCTCGATGTTTTCAGGCAGCGTCGCTTCAT 1239287 32 100.0 34 ................................ TTCACACCACCGAACTGTCCGCTACTTTGCGTCC 1239353 32 100.0 34 ................................ CTACTGAGCACTTCAATTTCCGGTTGATACTTTG 1239419 32 100.0 33 ................................ ACATCCTGATACGGTCCCGCGATGTTGTTCTTA 1239484 32 100.0 35 ................................ TAGTCCGCCTTAAGCGGTTTGTTAAGCCTCATAAA 1239551 32 100.0 34 ................................ AACGGACGGAGACGAATAAGCCATGCTCACTGAC 1239617 32 100.0 33 ................................ TCGATGGCTCGATAGAGCCGCCTTTTTGGTTAT 1239682 32 100.0 33 ................................ TCGACATGTGGGATATGCCAACCAGAAAGGAAG 1239747 32 100.0 34 ................................ GATACTGATCATCCCGTCGGCGAAGAAGGCCAAA 1239813 32 100.0 33 ................................ GAGGTAAATGCTTAAAAACACCCCAAGATAAAG 1239878 32 100.0 34 ................................ CATTCAACACGCCAGAAGATGCGTTGCTACGGTA 1239944 32 100.0 35 ................................ TCTGTAATTCGAGCTCATAACCTCACCTACATCGA 1240011 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 29 32 100.0 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTGCGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGCTAGTGAAGATGGACAAAAACGTCTCAGGCAATTAGCAAAGGTGTGTTTAAATTATGGTGTAAGGGTGCAATATTCTGTATTTGAATGCGAGATAGATGCGGCGCAATGGCTGCGCTTTAAAAATAAGATGTTGTCAATTTACGACCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGCAAAAACTGGCAAAACAAAGTGGAGCACCACGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGGTTTGAGTTCTCAGTAAAACACCGGGGAGCTAGCGATTGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTTACACCAAATAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTATACGTGCCTTTCACAATAGGCG # Right flank : CTTTTAGTTCCATTAGTTAACTCTCTTTACGTACGTCGCGCCTCCCGCTTGATTCCGGACGACCAAGAAGGCCACAGCGACAGCGACGGTGACGGCATTCCTGATTATCTGGATGCCATCTCTGACTGCAACGTGATTCAGCAAACGGTAGCAGAGAACGACAGCTTCCTCATTGAAGGTCAACCTGGCGTTTGTTTACGTAAAGGTGTCACCATAGTGGAAAACCAGACAGGTGGAGCGCGCTTGCTGGATAATGAGCTGACGGTCGACAACGAGGCGGACAACATTGGTGGTATTTTTGACTTTGTGGCGACCAACTTGCCACAACCCGGTCAGAGCTATCAACTGGTTATGCCGCAGCGTTTGCCTGTTCCGGCGAATGCCGTTTATCGTAAGTTCCGAGCCGATGTGGGTTGGGTCGATTTTGTTGAAGATGCTGACAACTCGATTGCGTCTACGTCGGGTGAAGCGGGCTACTGTCCGCCTCCGGGAGACAGTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 3238102-3239749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCG01000001.1 Vibrio navarrensis strain ATCC 51183 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3238102 28 100.0 32 ............................ AAGAAGTTAAAACGGTCCAGACCGGACAACTG 3238162 28 100.0 32 ............................ TTGGGTGATCAGCACTGAATGATCATCATGCC 3238222 28 100.0 32 ............................ TTGGTTCTTGCTCGATACAAGCCGTCCGCTTA 3238282 28 100.0 32 ............................ ATCGATGGCGACCCGTACAAGATGATTTCTCT 3238342 28 100.0 32 ............................ ATCAGGAATGCAAGAAATCATGGGCGCGTTGT 3238402 28 100.0 32 ............................ AGTATGACGGCACCGCTGAACGTTACGTGAAA 3238462 28 100.0 32 ............................ TGAATAACCGTTAGCTGGCGCGCAAGCGTATA 3238522 28 100.0 32 ............................ TGAATAACCGTTAGCTGGCGCGCAAGCGTATA 3238582 28 100.0 31 ............................ TGCTACGGAAACGTAGCGGGAATGTGCGAAC 3238641 28 100.0 32 ............................ TGACTTATCATCAGCGAGTTTGCATTAAGCTC 3238701 28 100.0 32 ............................ AACCACAACGAGAGCCCCACTGCAAAGCATTA 3238761 28 100.0 32 ............................ GTTTCTGTCATCCGGCACGCGGCCATCGGTTC 3238821 28 100.0 33 ............................ TTTTTCTGCCAATCTCTCAGCGGAAACCTTGAT 3238882 28 100.0 32 ............................ GTTACAGCGTTTCGCGCTGCGACCAATCAAAT 3238942 28 100.0 32 ............................ ATCAAGCCTACCCGCCTCATCCTGCCTAACTT 3239002 28 100.0 32 ............................ TAATAAGAAATAAAAACGCTAAGGTTTTTTGG 3239062 28 100.0 32 ............................ TGAAAAGCCTTGTGCCAATGAACGCTTGCATT 3239122 28 100.0 32 ............................ TCTTGCCGCTATTCGTGATTTTTATTTTTAAC 3239182 28 100.0 32 ............................ ACTTCGCGCATCTTTTCGTCAGTGTCGCACAT 3239242 28 100.0 32 ............................ TATCAGCCATGCGCCTTGGCATGGATGCAAAA 3239302 28 100.0 32 ............................ TCATCAGCAATCGCACGAGCTTTTTTACCGCC 3239362 28 100.0 32 ............................ CTAACCCGTGCTATTGAAGCCGCCAAGTTGTA 3239422 28 100.0 32 ............................ TGGGGGTGTGTGAAAGGACATAGCACACGCCA 3239482 28 100.0 32 ............................ GATTTAAGCGTGTGTTTGATGTAGGTCCAGTT 3239542 28 100.0 32 ............................ TGAATATTTCAAGACTAAGCATGAAATGTACT 3239602 28 100.0 32 ............................ AAGTCCCATTTTGACACCAGCGGTATAAGCTC 3239662 28 100.0 32 ............................ AATACTTCCAGCTCTAAACTTTGTCATGAATG 3239722 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGTCCTACTCATATGGTTAGCTCAGAAGTTCATGCAAAATATACTATTGGTCGCTTGCTTGGTTGCCTTGTCTATTTCAGTTTTGCACTCTTTAAGCCATCCATTGTGGGGCTTGTTCACGTTTGCCCCTTTTGTTGTTTTTTGCCTCGGTTTTCAGGTGTGGCAAAAGGTATCTACATCTGAGGGTGCAAAAGTCGCTTTCTTAACTCACGCCTTTCATAATAGTTATGTGTTAATTTTGGTGGGGCTATCAGCTTAAAGCTAACAAAGCATTTAAGAGTGATTCGCAACGCTTGGCAGTTTCGCTTCGCTCAAGTATAGCCAAGCGCCGCTCACACCTTAATGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGTTTAATCACGTCAAATCAGTTGGTTGTATCTTTTCTTTGCTCCCTCGGCTTGTAGGTTTTGCGCTTGTCGGCAAGTTGGCTTCGTTTGGCGCTGGAAATTCAGAGAGTTGCCTCAGTCAATTCTCGGGTAAGCGCGAGGTTAGGGTGGTTGGCTCAATCAGAAAATTGATCTTAGGTTTTGGGCTTGAACAGTCGAAATTTGAAGTTGTTTTTCAAATCTATGAGTCATTTCAGTTTTTTAGGTCTTGGCTTTTGTTTGTGAGTCAACGCTGAGTTAATCTTGGTTTTTGTAAAACGTAAGCCCTTGAAGCTTAAACATAACAAACGCTTTAAGACGGATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //