Array 1 5973-7180 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVJ01000024.1 Capnocytophaga canis strain GE-031 NODE_24_length_36997_cov_17.723949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 5973 47 97.9 30 ..........................................G.... CCATAGAAACTACAATCAAATATTTAAAAT 6050 47 100.0 30 ............................................... CTTTCAAGTATGCAATACTCCTTTCAAGTC 6127 47 97.9 30 ........C...................................... CTTAGGTAATGTTAGGTTATCTTCGGTTAT 6204 47 97.9 30 ........C...................................... AAGCAAGTTTGCCAATTGATAAAAATACAA 6281 47 100.0 30 ............................................... CAGGGAAGTTTCATTTTACTTGATTTCTCC T [6310] 6359 47 100.0 30 ............................................... CCGCCCCCGAAGACGTTGAGGACAATATCA T [6388] 6437 47 100.0 30 ............................................... TCTCCGTGATTTTGACAAGACTTATCAAAT T [6466] 6515 47 100.0 30 ............................................... AGGCCATTATCTGTAGTATCTAACTATATA T [6544] 6593 47 100.0 30 ............................................... TGAGTTCGAGAAACAAACCATTTCAGAAAC T [6622] 6671 47 100.0 30 ............................................... CGGATGAATAATTGTACAATTAAGCAATTT T [6700] 6749 47 97.9 30 .........................................C..... CTTAGTACGTTTGAGAATATCAATTTGTTC 6826 47 100.0 30 ............................................... TTGTCGGTTTTTGGCTAATACTTCAAAGGC 6903 47 100.0 30 ............................................... ACCCCAAGTGGGCGACCCTGTTAAAGATAG 6980 47 100.0 30 ............................................... TATACAGGTAATGAAGCGATTACCCGATGA 7057 47 100.0 30 ............................................... AATTCAAGAAGATGTCATCGAAAAAGCACA 7134 47 95.7 0 ........................A...T.................. | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.2 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAAACTAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATATGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTTCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : CAGACGCATCGTAGTAGTAGTGGGAGATTATGGTTGTAACTAATCACAAAGTTACAGACGATTTAATATCCCGCTCTTTGTACGACTTCAAATAATGAAGGTTTAAAGTATCCATTACAAAAGATTTCAAGCAGTAAATTATGTCCTCGTCCTTTTTCTGACGTAAGATGTCGAGAAAGATGATAAAAACCATCCTCTTGCTTTTCGTATTTGATTTTTTTTAGCCAAAATCCTGAACGTGTTATGTATAGCCAATCTTGAAATTGGAAAGGTGCATAGCGACAGTCCCAATCAGGAGGATAACCTTGAAGTAATGTTCTGTACTCTATGCTGGAAAGACGAAAGTCGATGCATTCTTCTGCTTCCCAATGCACACTATCGGGATTTGGGTATTGGACTCCGTAGATGATTATATTATCTTGCTTATTCATTTTATAAAGAATTAAGGTTTTTATTTTCAACGTGTTAACTTTCGTGTTTTGGAATTTAGAACTAAGGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 63-693 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVJ01000032.1 Capnocytophaga canis strain GE-031 NODE_32_length_23220_cov_10.389252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 63 36 100.0 30 .................................... AAGTCCAAAATCTCTGTATTCGAACATATT 129 36 100.0 30 .................................... GCATTTTCACATCGCATCAACGCTCGTAAT 195 36 100.0 30 .................................... ATTTCATTAGGTCGGGCGAATGAGTAAAAT 261 36 100.0 29 .................................... CTTAACACAGAAATCAATAATTGTTCACG 326 36 100.0 30 .................................... AACCCAATATTCTAACTTGAATTCCTGAGC 392 36 100.0 31 .................................... AGCTTCCCCTACCAGCTGACGTAGAAGCTGA 459 36 100.0 30 .................................... GATTTTAATGTTAATTTTTAATAGAAAATA 525 36 100.0 30 .................................... ATCAAGCATGAGTGCATATCCCTCATTAAA 591 36 100.0 30 .................................... CCATCAATCGTGATGTAGTCTGGAAATCAA C [601] 658 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TGATTACCCTCCAAAATGAGAGCAGTTCCAACATCTGAAGGAGCGAAATTTCTTATAAAATTG # Right flank : CCTCAATGCCAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCATATATTTTACTTCATCAGTGCTTCTTTTTCCCTTTTAAATACTTCTACAAAGTACTCGGCATAGGTTTTTCCTTTTGCTATCTTGCCACATTCTTCTTGGCAATAGTCCCAAAATTCTTTTTTAGGCAATTGGTTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAGGCTTTTTGTTCTAAATCGGTTGCTTCTTGTTTTAGTTGGTTAATGTCCACATCTTCAGGTTTAGTATCTAAGTTGAATACCTTATAACCATCCACATTTTCATTTTTAAATTGCTTTAAAAGTCCGTTGAGAATGTAGTATTTGAAATTTTGATTATCCCCTTTTTTTAATATTTCCTTATCTTTTACCTTTTCCAAAATATATTCCTCTATAAGATGGACTTCCTTCAGCAGTTCTTCTCTTCTTACTTTTTCATATTGTTCTATTTCTCTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 859-1870 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVJ01000075.1 Capnocytophaga canis strain GE-031 NODE_75_length_1927_cov_5.180000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 859 36 94.4 30 ...........T......T................. AATATTCATAATTTCTTGTTCTGGCATTTC 925 36 100.0 30 .................................... TCTAAACTTCAATCCAACAATGAAAAAGGC 991 36 100.0 30 .................................... GCTATATTTGGCTGAGCAAACCAGTACCTT 1057 36 97.2 30 ..................C................. ATGAGAACAAGAATAACAAGAAGGGTTAGA 1123 36 97.2 30 ..................C................. GCTATATTTGGCTGAGCAAACCAGTACCTT 1189 36 97.2 30 ..................C................. AAACGGAAGATGTGGAACAAGTAGTTCAAA 1255 36 100.0 30 .................................... AATAAAACCCGATTTCCGAAATCGCTCTTA 1321 36 100.0 78 .................................... CAACCAATTGCACACGGTTTTTTCAAGAGAGTTGTGATTACCCTCCAAATGCTTTGCATTCATGAGTTCCTTTGAAAA 1435 36 72.2 30 ACAA.A.AA..T.CA..................... AACCAACACCAAGACCAATCCTAAATGTTA GAAT [1451] 1505 36 100.0 30 .................................... TATTGAACGACAGCATAAAAGTACAAGGAG 1571 36 100.0 30 .................................... AGCTTTCAAAACAGACACCACACCTCGGGT 1637 36 100.0 30 .................................... CTTATTTATTCAAACGGAAACTTTAAATTA 1703 36 97.2 30 ..................C................. TGAAGAGAATGACTCTACTCCAATGACTTT 1769 36 97.2 30 ..................C................. TAATCTTTAAAATAATGAACACAGCATTTT 1835 36 97.2 0 ..................C................. | ========== ====== ====== ====== ==================================== ============================================================================== ================== 15 36 96.7 34 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TCAAAAATATCGCATGATTTTTTTATTCCATCTTCATACTCTTCATATTTTTTCGCAGATTTATTGCTTTGAATTTTTACATTGATTCATAATTGAGATTTTATATAAGAAAAAATTAATTTATATGTTTATTTAAAATGTTGATATTTAGTTGATTAGCAGTTAAAATAGTTATTAATTTTCAAAGCTGTTATCCTAATAAATGTAACTCAAAAACATAATTTTGCAACACTTTTAACTCAAAAACAAAAAGATACAAAACCTCCCAATGAAGTACATCGGGAGGTTTTTGCATTCATGAGTTCCTTTAGAAAAACGAACCAAAATTTTACGAATAACATGAGAGTAACAGTGGCTATTGGCTGTTAGCTATTAGCTTATGATTGTGATTACCCTCCAAATACTCTGTATTCATGAGTTCTTTTGAAAAACAATAAAAACTCACGAATAAAATGAGAGCAGTTCCAACAACTGTGCTTCATGAGTAACACTTATCGCAG # Right flank : TTTGTTCCGTCAGGGGTTGCTATTGAAATCGTTGTGATTACCCTCCAACATGAGAGC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : GTTGTGATTACCCTCCAACATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12-573 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVJ01000096.1 Capnocytophaga canis strain GE-031 NODE_96_length_612_cov_1.931959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 .................................... GAACCAAACGAACTTTACGAAATGACTTTC 78 36 100.0 30 .................................... TATCGAATGGCAGACCACTGGGGTGAAGTC 144 36 100.0 30 .................................... GAGCTTGGGCAAGATAGCATCAACATTGTT 210 36 100.0 30 .................................... TATTCAGAAAATTGCTCTGAAATAGGATAT 276 36 100.0 30 .................................... TGTGTAAATAAATGGTAATCAATATATTAT 342 36 100.0 30 .................................... ATAATAGCTGTTCAGTTAATAACTTTTTAT 408 36 100.0 30 .................................... ACTTATTAACGAAGTGTTTAGCACAGAAAA 474 36 100.0 28 .................................... CTTGATGATAGTTTCCTACTGCAACTCC 538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGATTACCCTCCAACATGAGAGCAGTTCCAAC # Left flank : TCGTCGGAAGCG # Right flank : GGAAGGTTTCGCCATTACAATGGATTCAGGGTTGTGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAACATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 814-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVJ01000084.1 Capnocytophaga canis strain GE-031 NODE_84_length_867_cov_2.709459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 813 36 100.0 30 .................................... ACACAAGGCACAAAAAAAGTCTGCAATTTG 747 36 97.2 30 ..................C................. CTAAAAGAAATAGGGTTTGATGAGCCGTGC 681 36 100.0 30 .................................... TCTATTCTTATATAGTAGGTAACTTTAGAT 615 36 100.0 30 .................................... AGACAATCCCGATTATGGTCCTATAAGATA 549 36 100.0 30 .................................... TCACCTATCATGGAATTGTTTGCCACTCCT 483 36 100.0 30 .................................... AAAGCAAGAAGGAGGTGACTTTGATTCTGT 417 36 100.0 30 .................................... ACAAACTAAATTATTAATTGATTTAATACG 351 35 97.2 30 ...................-................ AAGTGGCAAAAACTAACCAAGAGCATTACT 286 36 100.0 30 .................................... CCCAACAAAAACTTGCGCACGCTTTAGTTC 220 36 100.0 30 .................................... TCATCAACGTTGTAAGAGTACATAGATATG 154 36 100.0 30 .................................... TTTATTATTATTCTTAACACTTTTATTAGT 88 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : CTCCAACATGAGAGCAGTTCCAACTTGTTTGGTTACCTTTTCCAAATCACTCA # Right flank : CCTTTAAATCTTATTATTGATGATAAAAAATGTTGTGATTACCCTCCAAAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //