Array 1 20-297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLYZ010000111.1 Mediterranea massiliensis strain An772 An772_contig-115_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 20 47 100.0 30 ............................................... CAGATCATGAAAGACCTCATGGGCACCACG 97 47 100.0 30 ............................................... TCTTCGTGTATTGAAGCATCTGAAGATTTA 174 47 100.0 30 ............................................... CTCACGGTTGATATAAAACGACACCCATAC 251 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAGACAAC # Left flank : AGATGTGTATAAGAGACAGG # Right flank : ACACCTGTCTCTTATACACATCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 933-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLYZ010000087.1 Mediterranea massiliensis strain An772 An772_contig-115_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 932 47 91.5 30 ..........AT....................G...A.......... AACCTTCATGTAAATTCGGGTAGCGTCCAT C [918] 854 47 100.0 29 ............................................... AAAATGAGATACTTTATTATGACATTTTC 778 47 100.0 30 ............................................... ATTTCATTGAAGAAGAGAAAGAAAAAGCGA 701 47 100.0 29 ............................................... CGGTATTACTACACGTTTGACGAAAACAA 625 47 100.0 30 ............................................... CGGCCGATGCTTATCCGTTTCGCAAGTTCA 548 47 100.0 30 ............................................... ATACACTATCCATCCGACAATTATCAGAGC 471 47 100.0 30 ............................................... AGCAATGAAATAATCCTCATAACACTCATA 394 47 100.0 30 ............................................... AAGTTCGTATGCCAGGATGCTGACATCACG 317 47 100.0 30 ............................................... GTTTCACCTGTTCAACCGCCTTGTCGATCT 240 47 100.0 30 ............................................... AACATCTACCTCCAGCCGGAGCACTGGGAC 163 47 100.0 30 ............................................... CCATTATAGTCAAGCCCTAAACAATAAATT 86 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 99.3 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAGACAAC # Left flank : TTAACGAAGATTTTCAATTATCAATTTTCAATTCTCAATTAACGAAATGGACAAGAAAACTATTTGGAAAACCATCATCCAGACGCTGGTCACCATCCTGACCGCTATCGGAACCACGCTGGGCGTCACCAGCTGTATGATGTAGCCCTGCGTTGCATGCGACGACACAAGCACTGAATGAAACACCCGCCGCCTCAGGAAGAATGAGGGGCGGGTGATTTGTTTATTTTAGTACAATGATTTAAAATATCAAATTTCTATATTATTGCACATATAATGCAATATCATTTAAAACACTATCGCATCC # Right flank : CTTCTACGCCAACAGTAAACTGGTGGATGTAGTTGTGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 208-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLYZ010000124.1 Mediterranea massiliensis strain An772 An772_contig-115_123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 207 47 85.1 30 TAA.A..CAG..................................... AGATGTTCGAAACCTTCATGAGCAAAGGAA 130 47 100.0 29 ............................................... CGAAATGCAGCAGGCCATCGGATCAGAAG 54 47 78.7 0 ...................................C.GTCTCTT.TA | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 87.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAGACAAC # Left flank : AGATGTGT # Right flank : ACACATCT # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //