Array 1 222-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000145.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig145.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221 29 100.0 32 ............................. GTTGCTGGTGATGGTGCCGGTCATGGTGCCGC 160 29 100.0 32 ............................. GCCGTCGACGAAGTCGTCGCGGCCACCGAGCA 99 29 100.0 32 ............................. CTGTCGAGGGCCTCGACTGCGTCTTTGAGGGG 38 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : GCCAGACA # Right flank : GCCTGTGGAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000149.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig149.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CTGTCGAGGGCCTCGACTGCGTCTTTGAGGGG 62 29 96.6 32 ............................G CCTGTGGACGCAGCCGGAGAACGGCCAGACAG 123 29 100.0 32 ............................. GTTGCTGGTGATGGTGCCGGTCATGGTGCCGC 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : | # Right flank : | # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37245-35413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000042.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig42.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================ ================== 37244 28 82.1 33 ..........T...CT..A.......C. CAACCTCGGCGCGCAGCTCCTCGGCGCCGTCGT T [37239] 37182 28 92.9 33 ..............C...........C. GCGGACGGGCTTCTTCGCGATGTCCTGGATGCT 37121 28 78.6 33 ..A....T..T...C.T...A....... GACGACCGTCTTCCCGGCGCCGGTCGGCAGGAC 37060 27 85.7 188 .......G......C.......G..-.. CCTTCTCACGTACGCGCCGCTTCTGGAGTAGCGGTGTCATCCCCGCAACCACAGGGGTTATCACCAAGCCCGCCCCTTCAAGACGCCCCAGGCCCTGGCACTGACAACGCCCTCGGACCAGCCGCAGGAGCGAAATGCATGTAAAGGAAAACTGCGGCCGTTGCTAGCATTACTGCAGGTCAAGAAGT GA [37041] 36843 28 100.0 33 ............................ CCGCGGGCGGACGGCGGCGGCCCCGCCGAAGAA 36782 28 100.0 33 ............................ CTTCCCCTCGGGGGATCGGCGCCCGGTGCGCGT 36721 28 100.0 33 ............................ CAGGTCGTCGGACTGCTGCTGGGGGTTGTTGGT 36660 28 100.0 33 ............................ GCGGCCATATCCAGCTCGGCCGCCCGCGCGCGA 36599 28 100.0 33 ............................ CGGAGACCGATGACCCAGCCCGAGCCCGAGCTG 36538 28 100.0 33 ............................ GTCAGTGTTACACGCGGTGCACAGTCGGCCCCT 36477 28 100.0 33 ............................ TCGCGCCCGCCGGATCGACCAGATCCGCCGCAG 36416 28 100.0 33 ............................ GCCGTCCGGTGCCTGCCACTGCCCTGGCATGGC 36355 28 100.0 33 ............................ GGCCGAGGCCGTGTGGCAGATGGCCGACAAACT 36294 28 100.0 33 ............................ CAGTTCATGATCGCCGGGCCAGCGCTCCAGATA 36233 28 100.0 33 ............................ CCAGGCACTCCCGGCCTACCAGGCGCACCGGGG 36172 28 100.0 34 ............................ TCGACCACGTGCGGCCCGCGTCGAGGGGCGGAAG 36110 28 100.0 33 ............................ GCGCACGCACACAGGGGGGAGTTGCGGTGTGAT 36049 28 100.0 33 ............................ CCGGTGAGCCGGCGGCGCCTGGTCGACGGGCGT 35988 28 100.0 33 ............................ CTCGCGCTGCACGCTGCGGGTCACCGTCTGGCA 35927 28 96.4 33 .....T...................... CGCAGCGAAGGCGCAGCTCGCGCGGGTGCCGGA 35866 28 96.4 33 .....................A...... GAGACGCTTGGCCTCTTTGTACGTCACCAGGTC 35805 28 100.0 33 ............................ GCTCGCCGAGGTCAACAAGCGCTCCTCGCAGGG 35744 28 92.9 33 .................A..A....... CGGCGGCAGGATCTTCGGAAGCACCTGCGTGGC 35683 28 89.3 33 A...........T.C............. CCGCCTCCGGCAGTGAGATCTGCCCGTGCCGCC 35622 28 100.0 33 ............................ CGTCCCTGCCGACCTCATGACGCTTGCCGTGTG 35561 28 89.3 33 ........T.T...C............. GCTGTACGACCCGACCGGCACCCTGCACGGCGT 35500 28 92.9 33 .....T........C............. GCGTTGCGTGGGCCGTCATACCCCGGGGCTGGG 35439 27 85.7 0 .....T........C..A...-...... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================ ================== 28 28 95.8 39 GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Left flank : GCCGGAACGCGCTGTGCTGGAACTCGGCGAACAGGTGGGTGATCTCCTCGAAGGGGGCCAGCGGGGGCACAGTTACTCCTTGGGAGCGAAGCGGGTGAGAAGCTCGCGGGGGATGACGACGGCGGTCTCGGCTACGCCGAGGTCGCGGAGCTGGGCCCGTTGCTCGGTGTCGATCTCGTCGCCCTGGACGACGAGGTCGCCGGTCTCGATTACCTCGTACAGGGTGGGGCAGTTGCCGTGCTCGCTGGTGGTGCCGATGAACCTGAGCGTCATGGCGGGCTCCGTCTTCGTCGGGTGAAGTACCAGCATGGTCGACGAGCAGACCGAGTGCAGGAGGGTTGCGCGAGATTGCGCGACTCTGGCCGGGGCCAGCGGTGACCGTTCTTAGCCTGGTTCGTTGCCCGGGTGTGTCCGATCCGCTCGCCGACTGGTTCGACCTCCTCGGGGACGTCGTCGCCGGCTCGAAACCGCCAGCAGCACCGGCTGGTCGCACTCTTAGA # Right flank : AGCAGGCCTCCTGCTCGCGTTCTTCGGTGCCATGTCATCCCCGCGCCCGCCGTCCGGCTCGGCGCCGCAGCGCCCGCTGCCCCGCAGTCCAGCGTACCCGCCACCATCCCTCAGGGAGCCCCCTTGGCCACCAGCCCCACTTCCGGCGAGCAGCCCTCGCAGGAAGAGACCGGCTGGGCCCAGGCCCTCAAACGGGCCGTCGAGGCTGCGTACCACGGCACCCCGGCCGACCACTCCTCCCCCACCGTGCAGGACCCGATCGGAAAGCCGCAGGACCCGGAGGTCGAGCACGGCGTGCTGCTGCTGCGGGCCGTCGGCGTAGCCTCCGCCGAGGTCGTCGCCCACCGTCACACCTGGGAATGGCTCGCCGCCCGCGCTGCCGACCACGACCACTTCCGCACCCCTCCGGCTGTTGACGACCTGCCTGACGGCAGCATCAGGACTACCGTCTCCGGCCGCTCCCTGATTGCCCTGCTCATCGTGTTGTGGGAGATCCGGGA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40847-39721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000042.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig42.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40846 29 96.6 32 ............................C GGCCTGAAGGCCGGCGCCGAGGACCGGTACAA 40785 29 100.0 32 ............................. TCCGGGCACATGGCGTTCCTCACCCAGTGCTG 40724 29 100.0 32 ............................. CTGTCTCCGAACGCCCGCGCGTTCGCGCTCCA 40663 29 100.0 32 ............................. CCGTCGCCGTGATCCTGGGCGTGGAGGCTGGC 40602 29 96.6 32 ............................C TCCGGCGGGATCACCCGCGCGAACTCGCTGGC 40541 29 96.6 32 ............................C GGGGTGGCCAAGTCCCACGTGGCCGGGGTCGC 40480 29 96.6 32 ............................C GAAGTCCTGGGTGTGGTGGGGCCGATCGTCAC 40419 29 100.0 32 ............................. ACGGTGTCCGGCGGCGGGAAGAAGGCGCCCGC 40358 29 96.6 32 ............................C TACATGTCGCTGATCAAGACGGCCATGCCCCC 40297 29 96.6 32 ............................C AGCCTGCCCGAGGCGTACAGGGCCACGCTCCT 40236 29 100.0 32 ............................. CTCAAGGCCCGGCTCGGAGTGGACGAGGTCAG 40175 29 96.6 32 .........................A... ACCGCGGCCCGCGCCTGGCGCTGGGGCCCAGA 40114 29 100.0 32 ............................. CTGATGTTCAGCGGCAGGGGGTTGGTGGTGGT 40053 29 100.0 32 ............................. CGTGGCGCATGGATCGCTCCAGGTCAAGCGAC 39992 29 96.6 32 ............................C GGGCACCACAAGGGGCGCCGGATTCGGGGGAT 39931 29 100.0 32 ............................. TACGGGCGGGTCAGCCGGTAGTCCACCGCACT 39870 29 93.1 32 ......T.....................C GACGGCTGCATGGTCGTCGCGCTCCCGCTGTC 39809 29 86.2 32 .......................C.T.AC ACCCGTCCGCAGCGCGGCGAGCAGGGCGGTAA 39748 28 89.7 0 .........-.......A..........C | ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.9 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Left flank : CCGACTCGTCGGCAGCCGCCCCCACCCCAGACCTGCCGCCAGCACCGGCGCGGCCTCCACCACGTCCATCGCCTGAAACGCCGGACAAGCCTTCCCACAATCGTGAATACCGCACACCCACATAAACCACAGACGGCCCCGACCACTACTAACCTCGTCCAACCGCCGCCGGAACGCCACCGACAGGTACCGATCCCACACCACGCCAGCCACAGCCGCTGTATCCAGCAGATGCCCCAGCAGCAGATGCGTCCGGCCACCGTTCCTCGCCGCCGACTTCCCCCACAACCGCGACACCCGCTCCACGGCCTCCGGCGACAACCCCATCGCCTTCATCAGCGCGACGACCGAACCCCCGCGGTCTGCCATTGTTACCCCCAGTGCCAAAGTCCTGACACCCTAGGCCCTGGCACTGACAACGCCCTCGGGCCAGCCATCGGAGCGAAATGCATGTAAAGGAAGACCGTGGCCGTTGCTAGCATCACCGCAGGTCACAAAGT # Right flank : TCGTCGACGTCAACGTGGGAGGGTGAGGCCCCGGCTGGCGGGGGACATTGACCGGGCGGTCTGATTCCGCCCGTGCGAGCAGGAGATCGGCGTGCCTGTCGTTGGGCGGCCTCGCAGTCCACACAGCTCCGGTGCATGTACAGCGTCAGTTGGGCGGCGGAGTTCGAGTCGGGATTACCTCGCGGGCTTCGCCGACGATCGGACATCCAAAGGTCTAGTGCCTCATCGGGTCTCCTTGTGGCATGGGCAGTCACAGCGCTCCGGCGGGAAAACCTCGACGGCGCCGGGAGCGTCGGCCGGGACACGGCCGGTGCGGTTGACGTAGACCCCGTTCGTCTTGCACCACGTGTGCTCGTCGTACTCGCAGTCCGGCCGGATCACCCGGCCACTCGTCGTCGCGGCGGTCACCGGGCTGGTCCCGGAAGGATTCGGTACAGCCACTTCACGCCCCGGACCGCTGCGCAGATCCGGTGGGCGTAGACGTGCAGGCCGCCCTCGGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 51434-51706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000042.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51434 29 96.6 32 ............................C CACCACGGGCTCGTCGCCCCCGCCGCCATGGT 51495 29 100.0 32 ............................. GTGATGGCCATGCAGCAGCAGGCCCACGGCGC 51556 29 100.0 32 ............................. CGACTTCGGTAGCTGCCCTCAGGTGGTAGCTG 51617 29 96.6 32 ............................C CTGTCGAGGGCCTCGACTGCGTCTTTGAGGGG 51678 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Left flank : CTGGGACGACGGCGACACCGTCGTCAGCAGCGGCCGCAACTGGAGTGCCACTGACCACCTTGACATCATCCCGGAGACCCCCGAGCCCTCGGAACGGCCCGACCCGGACGACACCACCTCAGGGGAGCCAGCCCCATGAGCACCGGCACCACTGTGATCGTCCTCATCGCAGCCCCGCCCGGGCTCCGCGGCCACTTCACCCGGTGGTTCGTCGAAGTCGCCGCCGGCATCTTCGTCGGCAACCCCAACCCGCGCATTCGTGACCGCCTCTGGGCCACCCTTACCGACCGCATCCACGACGGTCAAGCCGTCATGATCGAACCCGCGACAACCGAACAGGGCTGGACCACCCGTACCACTGGCCGCGACCGCTGGACCCCCGTTGACTTCGAGGGCCTCACTCTCATCGCCCGCCCACGCCAAGGCGGACAGACGTGGCACCCCCAAACCACGTAAAGCAAAACAGCATGATCATGTGACAACACCACAGGTCACCAAGT # Right flank : CCTGTGGAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13206-12384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000077.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig77.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13205 29 100.0 32 ............................. GTTGCTGGTGATGGTGCCGGTCATGGTGCCGC 13144 29 100.0 32 ............................. CGGATCGGGCACGACGAGATCCGGGCGTGGCT 13083 29 96.6 32 ............................G AGCGGGGCGTAGCGCGGGACTCGTCCGTCGCC 13022 29 96.6 32 ............................G ACACCGGCACGACGACGGCTCTCTAGGAGTCC 12961 29 100.0 32 ............................. GGCTACAACATCTTGGTCCGCACGAACGGGAC 12900 29 100.0 32 ............................. CCGCCACCCCCGACATGTCCTGCCCGCACTGC 12839 29 100.0 32 ............................. CGGGTCACGGTCCCCTACGAACTGCCCGCGGG 12778 29 100.0 32 ............................. AGTCCGTACATGCTCTTCTCCTTGTCCGTGGT 12717 29 96.6 32 ............................G ACTCCCATCATCTGGCGCATGGCGGTGCGCAT 12656 29 100.0 32 ............................. ATCAAGCAGGGCGGCACGCTCATCGACCCCGA 12595 29 96.6 32 ............................T TCGGTGGTCGGCTGGTACTCCCAGCTCTCCCC 12534 29 100.0 32 ............................. GACGACGACACGGTCCTCACGCAGGCACCGTT 12473 29 96.6 32 ............................G TCCGACCCGCGTGGCTTCACCATGCCGTGGCT 12412 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : GCCAGACA # Right flank : TGACCACCAAGCTCTACACCGACCGCGTCTGCCACTTCGCGCACCACCCCGGCCCCGACGGTCATCCCCACCTGTGCGGCCGCCGTTTCCGAGGCGTGGCGAGCGCCGATCACCTCTATATGCAGTCCGCCGCCCGGTCCTGGCTCCGCGCCCGTGGGCAGGAGGCCGACTTCGACTTCGCCCGGCCCGACGGCGCGGCAATCGGATCGGTCCTCGACATCCGCCTCAAGACGCGTGGACTGCGCGTGCACCTGGACTAGGCGGTGATGCCCGTGTGGGACGAGGACGGCATGGAGCCGGTCCTGGGGATGTCCGTGCCGGTGGATCGCGACACCTTGATCCGGCGCTGGTATGTTCACCGGGTCCGTCTGGACAGCGAAGGCACCAGCCGCCGGGTGCGGATCGGTACCGAGGCGTTCGCACGGCCCATCGAATGGTTCGCCCTCGATGAGTGCGAGATGACCGAGCGCGGGCTGTCGACGCCGGCGGTGGAGCAGATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8618-8406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXJ01000089.1 Streptomyces bikiniensis strain NRRL ISP-5580 contig89.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8617 29 100.0 32 ............................. GCAGCACCGCGCGTCTGGCATCGAATGACGAA 8556 29 100.0 32 ............................. GTCACGGGATACTCGGTGGCCATGCCGGGCGA 8495 29 100.0 32 ............................. ATGCCGAACCCCCTCTCTTGTCGCCGGATTCG 8434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCGCCCGCGGGGAAGGACTC # Left flank : GAAAGGCGTTCTGCGTCTGGCGCTCGTCCACTTCCCGGCCGGCGAGGCCGCTCCCTTCCGCGAAGGCCGCCTTCCCGGCCGTGCTGATTCGTCGGCGTTTCGCCCTGCCGGGCCGCGGTGGTCATCGTCCGGGGGGCGGGGCCGGAACAGCCGATAAGTATCCTGAGCGCTACAGATTCGGCCCTGTCGCCCGGCCTACGCCGTGGGACGCCTGCGGGGCGGACAGGCGGCAGGCTGTTCGGCAGCCGGACCGAGCCCGCCGGGGCGAGGTGTTCCAGGGGTTGGAGCGGGCCGGTCGCCTCGCGCCGCGATGGCCGGCTGCCTCCTTGCGGGGAGGGGCCCGAGCGAGCGTGGCGGCCGCCCTGGCCGACTACTTGCCGTGCTGGTGGAAGTGGTCTGTCGTCTGAGGGGCACCGGAACGCGTTGCGGGTATTTTGTCCGTTTCGGTGAAAGTGGTTTCGAGGGGGCTGTTGGTGGGATAGAACTGCAGGTCAGAAAGG # Right flank : CTGTGAGCTTGCAGCGGCGGTCACCCTCACGGGTGACGATGAGCATGGATACCCACTCGACCAGAGCATGAGGCAGGTCGAGTGCGGCAGGATGGGGAACCAACAGGGCTCCTGCGCCGATGGGTGGAGACTTCGAACACCTCCCTCAACGGCACGGGAGCCCTGTGCGTTGCGGCCCTCATCCTGACCCGGACCGGGTCACTCGATCAGTGGCCACTCTGAAAAAGCTCAATCAATTTCCCACGCGGCTGCGCTTCCTCGCCGAACTCGCTACGGCACTGGAGCCTCCAGCACGCCCCCCCTCGGCCCCGCCGGGTCGGCGAGGCTGCCCATACCCTCAACGCCGAGCGGAGTGCTCCCTCACGGGGAGCACTCCGCTCTGAACGAAGCTGGGCCACAGCGGGTCGAGGAGAGCAGCGCTGTTCTCAACACTAGACGTGATGACAATACGGGCTTGACTTTACTGTCAACCCCCCCTTAACCTTCCTGCATGGGCGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGAAGGACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //