Array 1 848-1627 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJB01000016.1 Pseudanabaena sp. lw0831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 848 35 100.0 40 ................................... AGTAGAATTTGGATTCTTCATAATTTTGTGACTTTGTAAC 923 35 100.0 44 ................................... ACTTTAGCAGCAAGACTGTCGTGGAAGTGAGCGTATCTTTAGAC 1002 35 100.0 41 ................................... ATATCGTTAGCAGTTTCCAACGAGATCTTGTTGTCCAAAGC 1078 35 100.0 37 ................................... GTACAGAACGCATCCCAAAGGCACTTGGCATTCAGGA 1150 35 100.0 37 ................................... GAAGAAACGCAAAACAAAGCGTAGAAACAACAGTAGA 1222 35 100.0 41 ................................... TGACAAGTGGAATCCGAGCGGGATGGCTTCAGTAAGCCCTC 1298 35 97.1 38 ....................T.............. AAGAGTTGAGGAAATCAATCAATTGAGCGAGTTTTTGT 1371 35 94.3 36 ......TG........................... TCTAGCCACGAACAAGCTTGTGCCCTCCAATGCCAG 1442 35 94.3 37 ......TG........................... CAAAAAAACCGCACGCCAACATCGATCCCAGCGTCGT 1514 35 94.3 44 ......TG........................... CTTCGTATTTGATTACATTAAAATCTCTGAAAAAACAGAAGTAA 1593 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 11 35 98.2 40 CTTTCACCCCAAACACCCCGCAAGGGGACGGAAAC # Left flank : CTGGAGGAGTGGAAAAGTCAGCAAGTCGAGATTTTTCTGTTGCCTCCTTATAGTCCCCAGTTAAACTTGATTGAAATTTTATGGCGGTTTATGAAATATGAGTGGATTGAACTAAATGCATATGAATCTTGGGAAAGTTTAGTCTCATATGTTGAAAAAGTTCTTCGAGAGTTTGGTTCAAAATATGTAATTAATTTTGCTTAACTACTTATATTGCTGATGATAAACGTCACCATCTAGTTTTTACATAATTTAATATTATTAAACTAGACAAAAACTTGGTTTAGCAATTATAGTTTTTGCAGCCACCTCCATAGGTGGCAAGAACCTTGAAAACCGCATTATTACGTTGACCTCTGGAGGTCGCGCTCTCCATAAGGATTTCCGCCTTTACAGTTATAGTCTTATTGCGAATTTAGCAAGCTTATTGACTATGTAAATGACCTATGGAGATCGACCCTATTAAAAGCTTTACTGTGTAAGCCTCAAAAATATGAGGG # Right flank : CGTAAGGGAAAGAGAGAAGAATGAAGATCGAAGAGTAAAGAAAATGCTAAGAAAGAAAAAATTGTAGTAATCCAATACAATTAAATGCATAAGTTCGTTCTTCGATCTTCCCTCTTCTGCCTTTAAATTCCCTACTTCCGCCTTTGCCTATGAACTCCCAATGGTCAAACAACACCGAACTCGTCGGCATCACCCTGACCCTAAAACCACGCAACGATATTATCCTGCAACCCAACTACACCACAGGACTCCACGCATGGTTTCTGCATCAAGTCCGCGACAGCAACCCATCCCTCTCCGCCTACCTTCACGACGGACAATCCGAAAAAGCCTTTGCCATCTCACCCCTTAACGGCAAGCTCGAACCTAAAAACCAAAACCTCATTGCCAAAGCCGACCATACCTACACATGGACAATCTCAGCCCTGTCTCAACCAGTATGTGATTGGCTAAAAACATGGTGCGATCGCCCACCCTCCACACTCGACCTCTATGCAGGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCACCCCAAACACCCCGCAAGGGGACGGAAAC # Alternate repeat : CTTTCATGCCAAACACCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.70,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 3397-5253 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJB01000016.1 Pseudanabaena sp. lw0831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 3397 35 100.0 39 ................................... TTTATTGCTTTGTTCAGATAGTCGCTTTTTAACAAATAG 3471 35 100.0 48 ................................... TTTTTAAAAGCATACTCACAGGTCAAATACGCGGGATCTGACTGGGAG 3554 35 100.0 43 ................................... CTTGGAACCTTCTGATGAAAGTGGCGTTTTTTTCAAAAAGGTT 3632 35 100.0 39 ................................... TGTGCATTACCATCATCACTGACGGTAATTTCAACTTCT 3706 35 100.0 44 ................................... CTATACTTTTCCCGTCACTTATGATCGTGGCGATTTCCCAGACA 3785 35 100.0 40 ................................... ACTGCAATGTCGTTGGCTTGACTAGAATCGATCTTTCCAG 3860 35 100.0 38 ................................... CATGCAGTTTGATTATTAACTTGCACGTCCGCTGGGCT 3933 35 100.0 40 ................................... AAATGAATCATTAACGTCTAAACCTTTGTGAGTAATCGCA 4008 35 100.0 37 ................................... TTGACTTTGCGGTAGCCGTAACAAGCCCCACAACCAA 4080 35 100.0 42 ................................... TCATCTACAGCAACGGATACTTTGGTTCTATCTGACGAATTG 4157 35 100.0 40 ................................... TTTTTTGCCATGGATTGCCGAAGCATTCTATAATCTACTC 4232 35 100.0 43 ................................... TTTCCTCATGGATTCTACCTTTCCATTCCAGTTTTCTGCATTT 4310 35 100.0 41 ................................... TGCATGTTTTGCAGTATAATGAAGTTTTTAAGAGCCTCGTG 4386 35 100.0 36 ................................... CCTAAGGAATATTTTTTGTTGAGTGTTCTGTGTGTT A [4397] 4458 35 100.0 41 ................................... TCCTTGTGGCAAATATCTAGAGCCTCTCTAGCAATGCGTTG 4534 35 100.0 44 ................................... CCCCAGCTTTTTCGCCGAGGTCATTGGGTGAAAGCGTCCCACCA 4613 35 100.0 39 ................................... CCTTCTGGAGTGATCGTCTGCTGGGCGTTAACAGGGATT 4687 35 100.0 40 ................................... ATTGCAAAAAAGTCTATTTGCGCTTGAACTTTAATTGCCG 4762 35 100.0 45 ................................... TATGCTCCTTCTTCAGCTTTTCCGACAACAATTTGAACAACAGGT 4842 35 94.3 41 .........C..T...................... ATCGTGTCAATCAATTGACCTTTATTCATCGTCAGAATCAA 4918 35 94.3 42 .........C..T...................... TGTCACAGCGTAAAACTCTCCGTTCGGAAGTCTTACGACCGA 4995 35 82.9 47 G.....AA.CC.T...................... CCAACTGTTTCTAAATTAAATTTGAACGAAATATTAGCGCCCCGACA 5077 35 74.3 38 T.....AA.CC.T...T..A..............T AAAGCTCGTCGCAAATATCAGCAGACCGAGTATGGTTC 5150 34 80.0 35 G.....AA.CC.T..............-....... ATTTGTTTTGCCATAGTTTTTCTTTTCGTAAGCAT 5219 35 82.9 0 .C....C..C..A...............G.A.... | ========== ====== ====== ====== =================================== ================================================ ================== 25 35 96.3 41 CTTTCATGCTTACAACCCCGCAAGGGGACGGAAAC # Left flank : CGATATTGCTGACGATAAGCGTCGCCTCAAGTTATCAAATTTTCTTGAGGGGCATGGGCGGCGTGTGCAAGAAAGTGTGTTTGAGTGTTTTATAAGTTTAGATGACATGAAAAAACTCCATGTTAAAATTAAAAAACGAGTAAAGCCTGAGACTGATAATGTGCGGATGTACTGGATTCCGTCGGATGCTTTGCCTAAGGCTCTAACTGTCGGCAGCAATCCGCCAGCACCTCCACCCAGTTTTTACATAATTTAATGTTATGAAACTAGACAAAAACTTGGTTTAGCAATTATAGTTTGTGCAGTCACCTCCATAGGTGGCAAGAACCTTGAAAACCGCATTATTACGTTGACCTATGGAGGTCGCTCTCTCCATAAGGATTTCCGCCTTTACAGTTGTAGTCTTATTGCGAATTTAGCAAGCTTATTGACCATGTAAATGACCTATGGAGATCGACCCTGCTAAAAGCTTTACTGTGTAAGCCTCAAAAATGTGAGGA # Right flank : CTCTTAGGAAAGGCTGAAGAAGGAAGGCGAAAAATGAAGAAAAGATGAAAATATAGAAATACTAAAATTGTCGCGATCGGAAATATTTTTACTCTTCCGCCTTCACTCTTCCCTTACCCCCTTACTGGGCGCATATTATAAGAAATGTCCACCTCCATAATTGGACAAGAATCAGACTGAATAATATATTCCAAATATCGATTTTGACTAGCACAAGCAATCACCATTCCTGCCGTCATCGACTTCGTACCACCCGTATAGTCAGCAATGATTTTTGACTCGCTAATTCCTTTGCTTTCAGCATCAACGTAAATACTTTGAATCAACCTCTGAATATAGTTCGGATCGTCCACAAACTGCTCAGGTACAAGCAAGCTAACATCAGGAGCATTCTCATTCTTGATAACATAATCACCAAAAAAAATATTTGTCGTCATCAAACATCCCTCCTGAGCTAACCTTGCCACCAGCAGCTCAGCCTCATCCACCGACTTTTCCGT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATGCTTACAACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23719-25068 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJB01000011.1 Pseudanabaena sp. lw0831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 23719 33 97.0 41 ........................A........ AGATACTTCACAGACAAGATTAATGAGTCTTGGTTTGATAA 23793 33 100.0 39 ................................. GGATTTCCTGAACGAAACACCTGACTTCATGAAACTGGC 23865 33 93.9 39 .........T......A................ AGACCCATTAGCTAGGCTATCTAGCCAGCATGAAGTAAA 23937 33 100.0 39 ................................. AGAGATATTTGAACTCAGTCGCGACTATGCAAGAGCGTG 24009 33 100.0 39 ................................. GGATTATACTTATGTAAGTCCTGCGACTGAGACATATTA 24081 33 97.0 39 ..........A...................... GGATGTAATCAAGCACTTTGATACCCGTCAAGCAGTAGC 24153 33 97.0 44 ..........A...................... AGATTTGTGAACGGAAATACAGGATTTATTACGTTTACTGTTTC 24230 33 93.9 42 .........T......A................ AGTTTCATACGTTTGCGGTGATGACATGGGCTACCTAATAGG 24305 32 87.9 41 ....T............-....C...A...... GGATTTCAGGCTCACGCTTGGGGATTCAAAGCCGAGGACAT 24378 33 87.9 42 C....A.........TA................ AGAAGAAGACAGTTACCGCACACAAGCTGAAATCAATATAAC 24453 33 100.0 41 ................................. GGATGCACAGTACCTCAAAGGACAGTCCAAAATCCACTCAT 24527 33 100.0 39 ................................. GAAATACATTGCACGGTATGTAATCCAGCCGCAGATTGT 24599 33 93.9 41 ..............A....A............. GGAATTGGTGAACGTACCATCACTACAGTCCAGTCTATTGC 24673 33 93.9 39 ..C.............A................ GGGCAAAGCTTTCCCAGAGCAAACCGCAGGGCTTTATGC 24745 33 100.0 40 ................................. AGAAATCATGTGCCTACGCTGTTACTCACTCTGTCTGTTG 24818 33 97.0 40 .........................A....... GTACATATGAGGATGAGGAAAATCATCGAGCTTGCTTTCT 24891 33 97.0 39 ......................C.......... GGAATGCATTGAATGTCGGGAGAAAACTGGCGATCGCAA 24963 33 100.0 40 ................................. AGAATTTTGATTCTAGATCTAAAATTTTCAATTCTGAATC 25036 33 93.9 0 .........G.................T..... | ========== ====== ====== ====== ================================= ============================================ ================== 19 33 96.3 40 GTTTCCAATCGATCGCGTCCCCTAGCGAGTAGG # Left flank : GACACAATGGTACAAGTCATCGTGTTTAAGCCTGAGTTTCCAATTGATCGCTTCCCCTAGCGAGTAGGAGAATGATCTGCCTGAAATCTATTGCTCAGATGTGTCCCAGTTTCCAATTGATCGCTTCCCCTAGCGAGTAGGGGAGACTATTTGCAGGAGTTAATGGCTTCATCAAAAATTTGCTTACTGGGGGTGGATTCCGTTGCCGTGGACAGCTTGGTAAGCTCAATAGATGAATATTTACCCACCAGATAGGTACTCACGCAATCGCATTTAGACTTTGCTTTGTCCTCCTTGAGACCGCCCTTCATGGCACTCTGGGTGCAGGATTTGTCAAAGCTTGTCTTGAAAGAGTCTTTAAAACTCTTTTCATAGGCTTCTTTGCTCTTAGCGCACCCAGCCAGCATCAGCAGCGCCATGCAACAAACAATCAGTGTACCGACTCTCATAAAATCCTCCTCAAAATGACGTAGTGCGTACAACTGTAACCCAGTTTTTCA # Right flank : GAGACTAATTTTGATACTGCCAAAACTGGCAACAACTCATCAGCTAATAAGAAGCGATCGCCTTAATCACCTCCTCCAAATCCTTATACACCTGTGACATCAAACTAGCAGATTTTAAGGACACAAAAGACTGACCAGCAACTAAATTTAAACAATCAAGTAAAACCTTTGTCCATTGCTCTTGATTACCTTTACCCCAAGCCTCATAAACCTCTTGAGGAGTCATTCCCCTCAACCGATGAAATAACTCGTTGCGTTCATCCGCTAACTGTTCCCAAACAATCGAAATTGGATGACCTGTTAACCGTGAATTCGGTTCAAAAGTAGATTCAAATAGCGTATAGAGAACTCGCCCATACAAACCAAGCCTATTACGGCTTAAATCATCTTTCTGATTTTGATACCTCAGAGCATTTTCAAATCTAGAATCAATAGTACGTTTTGCAATTGGTGAGCCTTCTTTATCACCACGATAACGACTAGAATCATATTCTCGAATT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCGATCGCGTCCCCTAGCGAGTAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 13296-15517 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJB01000050.1 Pseudanabaena sp. lw0831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================== ================== 13296 35 100.0 37 ................................... CCTGAGCCATCGTATCCTAGGGCAAATAATCGTGCTG 13368 35 100.0 42 ................................... AAGTCGTATGCAGAAAGTGTATTAATGTCCTGCAAACTTGCG 13445 35 100.0 42 ................................... GTTCCCCAACCCTTAATATGGTAGAGGCTGCCTTTTATTAAA 13522 35 100.0 36 ................................... GCAAACCACGTGCAAATTATATTCGTCACGTGATCA 13593 35 100.0 42 ................................... AGTTGGGCTTGCAGGCGACGAGATTCGTCGAGTTGGTCTTGA 13670 35 100.0 45 ................................... TTAGATTTGTCAACTGCGTCCTCGGAAGTAAACTCTACCTCAGGG 13750 35 100.0 46 ................................... CTTTATCTGCAAGATGCTCTTTAGCAAGTTTCTCTTGATCGTCTTG 13831 35 100.0 37 ................................... CAATTTTGATGCGAATGTCAACTTCAGCTTTTGCTGT 13903 35 100.0 35 ................................... CGCTTGTATTAAATCCATCAATTTGTCCATCGAGA 13973 35 100.0 42 ................................... TATAAAATTTAGAAAGCTTGAAATAAACTCGCAGGCTTGCGA 14050 35 100.0 41 ................................... AAAATCGACAGAAACCAAACCTAGATCGCTGTTACGTTCTA 14126 35 100.0 40 ................................... CCTTGGGGATTGAATCTGAGATGGATTGAATCCACTATTA 14201 35 100.0 48 ................................... TCAAGGTAGATGACCAGCCGATAAAGAATAGTAACTCCCCTTTTAATT 14284 35 100.0 42 ................................... TTTGCACTCACAGAACGAGTGGAGACCAAAGCGGAAAGACCA 14361 35 100.0 39 ................................... GCCGAGTTCACGAAGCAATCTAATGAATGTAGCTTCGCT 14435 35 100.0 47 ................................... ACGAGTAGCTATTAGCTGGTGCAGTATTGTCCGCAACCACTTCACCT 14517 35 100.0 41 ................................... AGGATTTGCCAAATTTTGGATTTTTTCGTTTGCAGTTGCAA 14593 35 97.1 37 ..........................C........ ATTTAGTGCAATCAGATAAAATGCCATCTTCGCAATT 14665 35 100.0 38 ................................... CTTATTCTCAAACGAACACCAATTACTGGTAACTGTGA 14738 35 97.1 38 ...........A....................... CTTGCAAGCCCTGTTCATCGGTTATGTCTTCAACAATA 14811 35 97.1 36 ...........A....................... ATTCGCATATGCAATCTGCTTTTCGATACCGTCTAC 14882 35 97.1 40 ...........A....................... ACTATTATCCCTACGCAATCAATACGGCTAAAGTAACAAT 14957 35 97.1 47 ...........A....................... TCTTAGTCTCTACAACACCCCAGCTATCTTTGCCATTCCAATAAACT 15039 35 97.1 35 ...........A....................... CTGAACATTCTCGACTTTAACAAACACTGGGTCTT 15109 35 97.1 42 ...........A....................... TCTTGCAAGTACGACCCAAACCATTTGTCTGGGTTGGCAACC 15186 35 97.1 44 ...........A....................... CAGTCTTGCATTGTAAATCTGCCACATGCACAAAGTTTTGAATT 15265 35 97.1 41 ...........A....................... AATAAATACTGTTGCCACCGTTGGAAAAAGGAGAAGCAATA 15341 35 97.1 107 ...........A....................... CTGTACTTCTTGCGTTCCACGTTGCCGTGTTTCTGAAGACTTTCATGCCTATAACCCCACAAGGGTCGGAAACTGTAACCCAAATTGAAGGTTTTTGAGGATCACGA 15483 34 88.6 0 ......G..T.T.-..................... | T [15489] ========== ====== ====== ====== =================================== =========================================================================================================== ================== 29 35 98.6 43 CTTTCACCCCAGACACCCCGCAAGGGGACGGAAAC # Left flank : CGATATTGCTGACGATAAGCGTCGCCTCAAGTTATCAAATTTTCTTGAGGGGCATGGGCGGCGTGTGCAAGAAAGTGTGTTTGAGTGTTTTATAAGTTTAGATGACATGAAAAAACTCCATGTTAAAATTAAAAAACGAGTAAAGCCTGAGACTGATAATGTGCGGATGTACTGGATTCCGTCGGATGCTTTGCCTAAGGCTCTAACTGTCGGCAGCAATCCGCCAGCACCTCCACCCAGTTTTTACATAATTTAATGTTATGAAACTAGACAAAAACTTGGTTTAGCAATTATAGTTTTTACAGTTACCTCCATAGGTGGCAAGAACCTTGAAAACCGCATTATTACGTTGACCTATGGAGGTCGCTCTCTCCATAAGGATTTCCGCCTTTACAGTTGTAGTCTTATTGCGAATTTAGCAAGCTTATTGACTATGTAAAAGACCTATGGAGATCGCCCCTATTAAAAGCTTTACTGTGTAAGCCTCAAAAATGTGAGGG # Right flank : CGTTACTGCACAAACATTGTGTACCAATATAGCTACGAGTCTTAACAGCCTTTTCTAATACTTCTAATACTTGCCAAGCTCTCTCAACTTCAACTCTTTCGTTATTGGATAGTTTTTTTTGTTAAATACTTCTAAAGCACTATTAAACTTACCTACTTGACGTGTAAGCAGTCATAGTAAACTCATATATATTCTATTATCAAGAGAAATAAATATATTATTGAAGAGCCATTCGCTATATCATTTAGAAAACTTTTATCTAAAAATGCCCTCTCTCATCCCATCCCTCAATAGTTGTGTCGCCAGAATGACATCAGGCGAAAAGCGCTTTGCGGTGAGATTGGAGCAGAAACTAGATGACGATTATCTAATTTGGTATGACGTACCAATCGGCAAAAAGCAACTGCATCCCGATTTTATTGTGTTGCACCCGTTGAGAGGCTTACTGGTGCTAGAGGTCAAAGATTGGAAAATCGACACCATCAAAAATGTCACTAGAG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCACCCCAGACACCCCGCAAGGGGACGGAAAC # Alternate repeat : CTTTCACCCCAAACACCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.70,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 72984-77013 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJB01000081.1 Pseudanabaena sp. lw0831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 72984 37 100.0 34 ..................................... TAATAGTGTCTTTAACGCTCATAATTCAATCTCA 73055 37 100.0 35 ..................................... TGAATGCCTGTGAGGTCTTCAGGGCTAAACGCAAC 73127 37 100.0 34 ..................................... ACACTATTATTGAATCAATATGCTGATAGATTGA 73198 37 100.0 33 ..................................... AGCTAAATCTAGGTATAGAGTATATGTTGCTAG 73268 37 100.0 35 ..................................... TTCACCATTACCCATAGAGATAGTTTGAATCTCTT 73340 37 100.0 35 ..................................... TAAGGGCGGGAAAATAATCAAAAAAATTATAGAAG 73412 37 100.0 34 ..................................... GCGCCGATTGTGCCGCCTCCTTTGCATAACTCGC 73483 37 100.0 34 ..................................... ACTGGTTTAGAAACTAATATAGAAAACATCTCAA 73554 37 100.0 40 ..................................... CTAAAAGTAAACCCAAAAGTATTAAGAACATTGTCCAGAA 73631 37 100.0 39 ..................................... CAAAAGTTTAAAGCTTGCAATTGGTGCGCTAGCCGTGAG 73707 37 100.0 37 ..................................... AGGAGTATCAGCTCTTTTACTAGGCTCAATCACTGCT 73781 37 100.0 34 ..................................... TCTCCATGTTCTGCATGATGCGCTCTTGTTTTTT 73852 37 100.0 34 ..................................... ACTCCCTTCTATCCTTAATACAATATTCGTATTG 73923 37 100.0 34 ..................................... TTTTCAAAGCAATATTGATTTTAGGGTATCATGG 73994 37 100.0 34 ..................................... GTAAGTGCCACGCGCTCGACGGTCAGCAATAGTA 74065 37 100.0 34 ..................................... ACCAGCGATATCGACAAAGGGAATATTTTCTAAT 74136 37 100.0 34 ..................................... GCCACTATGCTGAAATTCACCCTACCCACCACCC 74207 37 100.0 36 ..................................... CGAAATACCTTGGTAATCGCATCCAAGCTTTCAACA 74280 37 100.0 43 ..................................... AATCTTAGCGATTACATCTTCAGGATTGCCAAGCGCGGCTAGT 74360 37 100.0 34 ..................................... AAGCGTTACTCTTTGTATGGAAGCCTTGCGAGTA 74431 37 100.0 38 ..................................... AGCATTGATCTATCGCACCCTGAGACTTGCCACATCCT 74506 37 100.0 35 ..................................... CCCACCGCTCTAGCAAAGTTTGCAGCACCGTATAA 74578 37 100.0 35 ..................................... CCATTGCCTTTATGCTGACTTTGGCAATGCCATTC 74650 37 100.0 38 ..................................... GCTGATGCTAGTGGAATTGTAAATAAAAACTTTGAGAA 74725 37 100.0 36 ..................................... GGTGTGATTGGGACAGATCCCAAGCAGGCTCAAATT 74798 37 100.0 39 ..................................... TTCCTAAGAAGAGTCTTTGAGGACGGCGGCGCGATCGTA 74874 37 100.0 36 ..................................... ACCGACTTTAATCGCGAACGCCGTGCAGTTTGGTAC 74947 37 100.0 38 ..................................... GTAAAATTATCACTGATTTACTAGAGCTACAATTTAAA 75022 37 100.0 35 ..................................... ACTGAAAGCGATCGCGTTCGACATCTTGAAAGTAA 75094 37 100.0 34 ..................................... AAAGTTCTAATTGTTCTTCAATATCTGAACGGTG 75165 37 100.0 35 ..................................... AAAGACACCGCCTTGCGCCCCTCTATGTCAAAGAA 75237 37 100.0 35 ..................................... ATTATACCAATCCCACCTACCAAGATAGAAACTAT 75309 37 100.0 34 ..................................... TTGCTTAGGATAGCAAGCGTAGCTGTTTTCACGA 75380 37 100.0 34 ..................................... GCAGTATCACCGCTTGGAGCGTTAGGAGCCTCAA 75451 37 100.0 34 ..................................... AACGCGATCTATTGGATAGCGTTAACATTATTTC 75522 37 100.0 33 ..................................... TATAAGGAGCTAATGGGAGGGTTGATAGGACAA 75592 37 100.0 34 ..................................... AATCAAAATTACATCAAATGGTAAATCTTTAATA 75663 37 100.0 35 ..................................... TTACCACGCTGCGGCGGCGGAAGAAAATTGCTACA 75735 37 100.0 35 ..................................... TTAGCTTTTAACCTAATAACTTTAATTTAATCATA 75807 37 94.6 35 .C...............G................... CCAAAAGTCTGTATAAGGCTGTAAGGCTAAATCAT 75879 37 94.6 35 .C...............G................... TCAACCTCTCTTTCAAGCTTTTCAACCCTACTCAC 75951 37 94.6 34 .C...............G................... ATGGTCTGGCTTGAGTACGATCACGCGCTTAACT 76022 37 94.6 35 .C...............G................... GAAAAATGCCAAGCTAGAGGTTGTTGCCTGAACCT 76094 37 94.6 38 .C...............G................... AATTGTCCTTCTTCAGTTAGCTTTCGATACTCGTCCAA 76169 37 94.6 35 .C...............G................... CTAGTAGAGAATTGAAGAGGCGATCGATATAGCGC 76241 37 94.6 34 .C...............G................... AAATAGCATTACTTTTCTAATTTGCTCTACTACA 76312 37 94.6 35 .C...............G................... ATATTTTTGATACCGTTTACGATGCTTGGATAGTC 76384 37 94.6 42 .C...............G................... TTTGCAGATCCAAATATTGCCGCTTCCAATAGTCCCGATCTA 76463 37 94.6 36 .C...............G................... AAATCTGTTATCAGGATCTAAAGTAATCATATGAAA 76536 37 91.9 41 .C.......T.......G................... TCAGAACTCAGTACCTACAGAGGGTTTACAAGGTATCACCA 76614 37 94.6 37 .C...............G................... AGAAAATTGTAGATTTTATCTAGCTTTGCGGCTCGTG 76688 37 91.9 36 .C...............G..............A.... GGTTTTCGATTTCTGGATTTTCCTTGTTGAGTAGGA 76761 37 100.0 35 ..................................... GGTAAAAAATGATTGCAAAAATTGAACCTAAAAGC 76833 37 100.0 35 ..................................... CTTGAGCGTTCTTTGAGCTTGATTAAGTCTCATGG 76905 37 100.0 35 ..................................... GAAACATACCTAGAGCTAATTTCAAGCACCTTAGA 76977 37 97.3 0 ..........T.......................... | ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 98.6 36 GATTCAAAGCCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : GCCGCACCAAAATCCATAAGATTCTGAAATCCTATGGTCAATGGATGCAGTTTAGTGTGTTTGAGTGTGAGCTTACTGATGCTCAATATGCGAAGTTGCGATCGCGTCTCAGTAAATTGATTAAGCCTAGTGAGGATAGTATTCGCTTTTATTTTCTTTGTGGTGGTTGCCATCCTAAAATAGAACGCATCGGCGGCGAACAACCTTTGGATACGACGATATTTTTTGCCTAAGTTTGGTTCATGGTTTGCGCGAGCGATCGCCTGTTTTTGGGATAGTATGCAATGAGTGGTCTTACAAGTGTTAACTAGTATATCTTTGGTTGCGATCGGGCTGGTCGATCGATTCGCGCAAGTCTTGAATGTGCTGATATATATAGGTTTACTGTGTTTACTACAATGTCTGCGATCGCTTCAGCAAGCCTATATCTGTTATAATTCCTATGATTCGCGCAAATGCACCTTGAAAACCAAATATGATATACTTTCTAAGCGCGGGCG # Right flank : CTGCTCCTAAGATTTAAAACATCACGAACCTCATCTAGAGGCGTTGACCATAGAGACTTCCAATCTATACCAAATAGAGGCTTAGCATGTTTTGCCATCATCCATCCTTCGGCGATCGCATCCATATATTCAGCAGAACGCTCAATATCATAGACTGCACTTTTGAGGAGGTTCTTTGCAATTAAAGCCAGCCAAAATCTACTCGCCTGAAGTTGTGAAACATAGAAAGCTTCTAGCTGAATCTCACCAATAATATTGGTATTAAATCCCGTCACAACATGCCAAATATCATGAGTTTCCGTAATATGAGCACCCAAAAACTCATAATCATTGCTGCTGGGTTTGATTTGTAACGGCTTCAGCCCATTTTGCAACATATGGTTAGCATAAGCATAGCCCAGCGTATGAATTGGCAAAAGAGCAAGCAATTCTAAATCAACTTCTCCGAGACGAGGATAGTTGGCAAAAGCAGCTTTGCCTTGAGGCTCATTAGAGAGAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAAAGCCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //