Array 1 49914-52149 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTW01000004.1 Ligilactobacillus salivarius strain FZJTZ1M1 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 49914 36 100.0 30 .................................... TTGTAAAACAAGATCATAGTAGCTAGCTTT 49980 36 100.0 30 .................................... ATATTTTGCCAGCTTTTGGTTGGAACCAGT 50046 36 100.0 30 .................................... TGGCAAACTGTCCCACGTCTTAGTTTTGAA 50112 36 100.0 30 .................................... TTGCATAAAAAATAGGCTGTTGCTTACCTG 50178 36 100.0 30 .................................... AAGCACGAAGATTATTGAACAAGGCGGAGG 50244 36 100.0 30 .................................... ATTACAAAAGGCTGGGACAACTATGACGAT 50310 36 100.0 30 .................................... TAATTCAACGTTTGAACCTTTGAAAATCAA 50376 36 100.0 30 .................................... GATGAGCGCACGTTTAACGTCCCTGGGCAT 50442 36 100.0 30 .................................... GTATTTTCTGTAAATCCATACTCGGTCATA 50508 36 100.0 30 .................................... GCATCTGGAGTAAAGGCGGCACAACTATCA 50574 36 100.0 30 .................................... ATCAATTTTGGTAGTGGAAACTTAGCTGCA 50640 36 100.0 30 .................................... TTCTTTAATTGCTTTTATGAGTTCGGCTGC 50706 36 100.0 30 .................................... GTAAGTCTAATAACGAACTAAACGCAACTT 50772 36 94.4 30 .......C.......................C.... TAGACTTTTGTTAAACATTCTCGAAAATGA 50838 36 100.0 0 .................................... - Deletion [50874] 50874 36 91.7 30 A..A..A............................. CAATCATAGATTTTATAAAAACATTGTTAA 50940 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 51006 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 51072 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 51138 36 100.0 30 .................................... AGATGTTTTAACGTTTATCAACTACAACAG 51204 36 100.0 30 .................................... AGATGTCGGTGGAATATAGCCCATGAACTG 51270 36 100.0 30 .................................... TGCACGTTTGAACAAGTACGCTAAGCAACG 51336 36 100.0 30 .................................... GTATGCAAATCTATAATGCTGCTTATTATA 51402 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 51468 36 100.0 30 .................................... AGACTGTTTTATTAACGCATTAATGAAGAA 51534 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 51600 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 51666 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 51732 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 51798 36 100.0 30 .................................... AAGTTCACACGAAAAACCCTATGACAATAC 51864 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [51897] 51930 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 52048 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 52114 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 34 36 98.0 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAACTCAGAAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //