Array 1 45-1348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNT010000036.1 Eggerthella lenta strain 1001136B_160425_H2 NODE_36_length_1392_cov_28.3802, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 45 33 100.0 32 ................................. GAGTTCGTTACCGACACGATCGGCCTCATCGG 110 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 177 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 244 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 312 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 379 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 446 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 513 33 100.0 36 ................................. ACGTATACGGGCTTCGCGCCGGTGCCGTTGACGTCC 582 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 648 33 100.0 33 ................................. GATCCGCTACGACAACGTAGGGGATCAGGCCGA 714 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 783 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 850 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 916 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 984 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 1051 33 100.0 34 ................................. AGGCCCTGTCGGCCCGGTCGGCCCTGTCGGCCCC 1118 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 1184 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 1249 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 1316 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : CGGGTTGAAATTAAACGAACTTGAACAGACGCATTTTGATAACCG # Right flank : AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTGGTCACTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 81844-83737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNT010000013.1 Eggerthella lenta strain 1001136B_160425_H2 NODE_13_length_83781_cov_50.803, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 81844 33 100.0 34 ................................. AGGACGGTTGACCCGTCGAACACGAGGGCGCTAA 81911 33 100.0 33 ................................. CAGGGGAAGAAGCGAAGACTTGGCTTATTCGAT 81977 33 100.0 33 ................................. GGCTATGGCTCATGTTAAGGGCTTGCCGTTCGG 82043 33 100.0 33 ................................. AAGCGCGGCATGATGCAGTACGGCGAGACTATC 82109 33 100.0 32 ................................. TACAAGGTGCAGGTTCCCGATGCGTCGGCTGC 82174 33 100.0 33 ................................. GTGAACGTCGGCGCACCTGCGGCGTTGTACTGT 82240 33 100.0 34 ................................. CTGAACGACTACGGGCTGCAAGACCTCGTGGGGC 82307 33 100.0 33 ................................. CCCTTTATTACAGGTACATAAACACCGACCGCG 82373 33 100.0 33 ................................. TACTCCGAAACGGAGTACATCCATGACACGGAG 82439 33 100.0 33 ................................. CGACACCTGCGCCTGAGTGTTTCCGATGGTAAG 82505 33 100.0 33 ................................. ACGATCAGCCCGCCGTCTATCCGATGGCGCAGC 82571 33 100.0 33 ................................. CAGATGTCGCCGTTCATGGGCGCTTCAAGATCG 82637 33 100.0 33 ................................. CTCATAGTATGCGGGGCGCTGATGCGCGCCCCG 82703 33 100.0 33 ................................. CTCATTGGTGATCTCAATTCCAACCGGCACGAA 82769 33 100.0 34 ................................. TCCAGTATACAGAGCGTTGCGCAAGTTGTCCTGG 82836 33 100.0 33 ................................. CCGTGCTGCGCCCGCCCAATTCCATGAAAAGGC 82902 33 100.0 34 ................................. CAAAACCGAGAGGATGCTCATATCCGACGGCCGC 82969 33 100.0 33 ................................. AGGCCCTTAAAGCCCGCAATTACGACCTGTTGA 83035 33 100.0 34 ................................. ACCTTGTAAAAGCCGTCGATGCGCGCGTACTCGG 83102 33 100.0 35 ................................. TCATATTCATAGATGTTCTCTGGCAGTCCAGGGAG 83170 33 100.0 33 ................................. CACATAGTCACGCCATAATCATCGCGCGAGAGC 83236 33 100.0 33 ................................. TACTTAGTGTGTTATATGCGCCGCAAATACTAT 83302 33 100.0 34 ................................. GGATACGCTCTCATGCATGCATACCCTGTGGCCG 83369 33 100.0 35 ................................. TTGTTGTCGCCGTTCCTCGCGGCAGCCACCTCGGC 83437 33 100.0 33 ................................. CGATGCCGACCACGACGATAGCGCCCATGATGG 83503 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 83568 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 83635 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 83705 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 29 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTGGTCACTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 71052-70341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNT010000015.1 Eggerthella lenta strain 1001136B_160425_H2 NODE_15_length_71095_cov_51.3599, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 71051 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 70985 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 70915 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 70846 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 70780 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 70714 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 70643 33 97.0 33 ..T.............................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 70577 33 97.0 34 ......T.......................... GAGGAATATACGCGATTCGTTGAAACGGATGTAG 70510 33 90.9 36 A.....T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 70441 32 93.9 34 .................-..............C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 70375 33 75.8 0 .....GTT.A..T.....C.C..........G. | C,T [70359,70371] ========== ====== ====== ====== ================================= ====================================== ================== 11 33 95.6 35 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : CGGGTTGAAATTAAACGAACTTGAACAGACGCATTTTGATAAC # Right flank : CGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCACTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //