Array 1 16695-16534 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIF01000146.1 Clostridium saccharoperbutylacetonicum N1-4(HMT) strain ATCC 27021 contig146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 16694 30 100.0 36 .............................. GAGGAATGATGACAGGCAATGAAGTAAGAGACTGGA 16628 30 100.0 35 .............................. TAGAGTACAGGATGTGTTGTTTGCATTTTTTGAAA 16563 30 93.3 0 .........C.....T.............. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GATTAACTTTAACATGAGATGTATTTAAAT # Left flank : TATATCCGAGGGTGAAAGGTGATACTCCTATAGTTAGCTCGGTATATCAATTGTCAAATGAGGAATTGTTTGATGAATCTACAAGACCGAATGAGGAGCAGAGAGAAGAAATGAAAGAAAAGATTAAAAATGAAATTGTACGTCTACTTTCAAGATAAGTATTAATCTACTTATATACATCATACTTAAAATAGTAATAGTGAAAACTATTATAAATGGAATCATACCTATCCCTCCAAGAATCATAATTGTATTAATTATAACACTTATTCAATTTTCAAAGAACATTTTTTAGTGGTTTTATAATTCAATATTTCTAAATTTCATCCCAGCCATAAAACAAGAAAAATTTCATGAAAGTCGGTGAAAATAAGGCATAAAGAAGAACTTTTTGAGTGGTAGCTAAAATTCATAAAACAGCTGGTAAATTTCTATGAAAAAGTTGATTCTAAGCGGAATGGATGGTATTATTGATTTTAAGGAATGGCTATTTTGCTATG # Right flank : CCCAATAGTTAGTACGTCCTATTATTTTGTAATAAAAAATATCACGATATTCATATATTATTCTGAATATTGTGATATTAAAAATTGTTGTTTACAATTTAGTAACTTATTTAATTTATAGTTAATATTCATTCAAATAAGTCTGTAATAGATCTGCTAACTTTCCGATATGTATTCCATCGACAAATGAATGATGTGCTTGTATGGAAAATGGAAGCATCATTTTTCCATCTTTCTCGGAATATTTTCCCCAATCAAATAATGGTGTGGCATTATCCTTTTTACCAGAATTAGTATGTGAAATATGTGTATAAGATATCCATGGTAAAGGTGAAAATTGAAATATATCATTACCTAATGGACCTGTAAAGTACTCCTTTTGGTTTGAAGCTGCCTTAGTGGCCTCAATTACATATTCCTCCAATGTATCTTTCTTCAACATTAACAACTTTAAATAACTCTGTTTCCTTATTCAAATAGGTAAATGCAGTATCTATTCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACTTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 91881-93350 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIF01000026.1 Clostridium saccharoperbutylacetonicum N1-4(HMT) strain ATCC 27021 contig026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 91881 29 100.0 37 ............................. AATGAATGGAGACAAGTTCTTAATTTACCGCCTAAAG 91947 29 100.0 37 ............................. TTTACCTAATGCCATTGCAATCAACCTCACTTTCTTC 92013 29 100.0 36 ............................. TTGGTATTTTCATGTAAAACTTTCCTGCATCACTTG 92078 29 100.0 36 ............................. CATGGATATTATTCATATCAATTTTATGTTCATCAA 92143 29 100.0 37 ............................. TTTTTCTTCATGTTTTTAAACCAGTTAACTATTTCAG 92209 29 100.0 36 ............................. ATAGGCTACTCTCTGATTGTTCTTTTTTGGCGTTAC 92274 29 100.0 36 ............................. TATTAAAAATAAATAATGTATCTGTTGTATTTTTAA 92339 29 100.0 36 ............................. CTGCTTTATATGGAACTTATTACAATGCTTATAGAG 92404 29 100.0 36 ............................. TTTAATTATTTTAATCTTCCATTTGAATCTATTAAA 92469 29 100.0 37 ............................. AAATAAGATTTCATAAGAGTTAACTTATTACCTCTAA 92535 29 100.0 36 ............................. ACAACTAAGATACCATCCCCATCAATTATATATTCA 92600 29 100.0 36 ............................. CCAAATTTCACGTTCCAGCCTCTTTTTTTCTTTAAA 92665 29 100.0 36 ............................. CTTGCTGCTTTTCTTCTTTTCTTCAATTTCATAAAG 92730 29 100.0 37 ............................. TTTGAATTTGTTTTTGTTCATCAAGTTTCTTGTCTTC 92796 29 100.0 36 ............................. TTTTCAAATGCCATAGACATTAATTGTTTTGTTAAG 92861 29 100.0 37 ............................. TCAAATTAATTGTTTCATTAACATGGTCACTAATCAA 92927 29 100.0 37 ............................. CTAATCATAATTTCTGAATTTTGAAGCTTTCCACATT 92993 29 100.0 36 ............................. TATTTTTATTGCTTTTTTCTTGCAATAAATGTATAA 93058 29 100.0 37 ............................. TGGTTTACATTTGTTATTGTAGATATTAACACATCAT 93124 29 100.0 37 ............................. AAAGAAATAATGATAGAGTACATTAAGGATAATGTTA 93190 29 100.0 37 ............................. TCGTTTTTTACATAGTTGTATGTTCTTTGAATTCCAT 93256 29 100.0 38 ............................. AAAGATTGGAGTGTGCCAGTTCCAATAACTTTTAGAAC 93323 28 93.1 0 ..................A.........- | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.7 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : ATAAAAATGGCAATTGAAAATGAAGAATATAAGCCATTAAAGGCGTGGTGGTAAGATGTTTATAATATTAACATATGATGTTGGAGAAAAGCGGGTAAATAGAGTGCGGAAATGTTTAAAAAAATACTTAACTTGGACTCAAAACTCAGTATTTGAAGGAGAAATAACAGAAGGAAAATTACATAAATGTCTAGCTGATGTTAATAAATTTATAGAAAGAGATGAAGATTCACTCTATATTTATATGGTTAAAAATATTCACAATATAAAGAAAGAAGTAATAGGACAGCAAAAGAATTATGATGAGCTATTTTTGTAGTTGCAGTAAATCAATTTTGGGTAAAAGATGTTTTAAATCAGCATAAATTCTAGCTTTAGAGTAATAATATCTATAAACACTATTTCCATACTAAAGGTTTACCGCAAGAATATAAAAATTAAATCAAATTTATCAGCGATAAATGGCTAATTTACTAGAGTTATGGTATACTTTTTTTAGG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24-2343 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIF01000027.1 Clostridium saccharoperbutylacetonicum N1-4(HMT) strain ATCC 27021 contig027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================== ================== 24 29 100.0 37 ............................. AAATTTTTATATTTCATAATGAAGTCAATCGCATCAC 90 29 100.0 38 ............................. GATAGAATGGCTAATATTATAAAAAAATTTCTTAATGC 157 29 100.0 36 ............................. TGGAGTAATATTCCCTTTATGTTCTATATAAATTTT 222 29 100.0 36 ............................. CATATATAATTTAACAGATTTATAAATTTTGTCAAT 287 29 100.0 36 ............................. CCTTTTAATATTGTCTAAAACTATCAGATTTCCAAA 352 29 100.0 37 ............................. TCAATATATTCCATGTTATAAACGTCATAATGTTCTA 418 29 100.0 36 ............................. ATAGGATAAAAGTTAGAGTAGATTTACTAGTAAAGG 483 29 100.0 36 ............................. TAGCTCCACCGCTTGTAGCTACAACACCAACCATAG 548 29 100.0 102 ............................. TATTATTATCGTATTTATCAGCTTTCAATAAGATAAATGCAACTACATTTAAACAGAATGTAAATTATTATTATCGTATTTATCCCAAAGCCAATAGTCTAA 679 29 100.0 36 ............................. TAAGATGGTTGATAAGACTATACGTGAATATTATGA 744 29 100.0 37 ............................. AATGCTTCTAAATCACTTATGACGCGTTGTTGCATAG 810 29 100.0 36 ............................. CAATGAGTTTAGATGATGAAAGTTTAACATTAATTG 875 29 100.0 36 ............................. TTAGATCATCTATTCAATAATGAATCAGTTCAATTT 940 29 100.0 36 ............................. ATTAAATGGTTGCTTAAGAATAATAAAAGATATCAC 1005 29 100.0 36 ............................. CATTCTCCTATCTCAATAAATGAATTATTATTTTAA 1070 29 100.0 36 ............................. ACGCAATCACCATTTAATATTAAAATTCTGAAATCT 1135 29 100.0 37 ............................. GTGGAATGTTGCCATCCACGTTACAATCTTGTGTTTT 1201 29 100.0 37 ............................. CTTTATGAATTTAAAAATACTGATATATCAAAAGTAA 1267 29 100.0 37 ............................. ACCATATTAGCCATTTTAGCTTCAAATGATAAATTTG 1333 29 100.0 37 ............................. TTTTCCTCAAAAGAAAGCTTATCCTTATCGATTGAAG 1399 29 100.0 35 ............................. GCTTACGTGGCAACATACAAAAAGTTTCTTTATAC 1463 29 100.0 37 ............................. AACTTTGTTATAGCTTCTAAAGAAAATATTATTACTA 1529 29 100.0 37 ............................. TGATTATAACATTATCATTGATGATATTTTTGTACAA 1595 29 100.0 37 ............................. GGCATATATTTTGTTGTTGTATACTCAAAAATGTGAA 1661 29 100.0 36 ............................. TGCATTAATACCATCATGCCCGACATTGCTTCTTGC 1726 29 100.0 36 ............................. AAAGGTACAATAGATAGATTTACAAGTGATATTTAT 1791 29 100.0 37 ............................. TTGGTATCAAGACTAGTTTCAATAATTATTTTTCCAT 1857 29 100.0 36 ............................. ATTACTAGAATGGGAGGAAAAAGCAAATTAAGAAAC 1922 29 100.0 37 ............................. TTTACTGGCTCCTTTGTAGCCCCTTCTAGTGTAAATT 1988 29 100.0 37 ............................. CTGTTCTGCCTTCTTTTTGTGCTTTGGATATTTCGGA 2054 29 100.0 36 ............................. TATATTTATTACATCAGTTAAATTTATTTCTCCTTT 2119 29 100.0 36 ............................. AAATTATTATATGTTTAGAGAAATTGGGTGGGCTAA 2184 29 100.0 37 ............................. GAATGATGTGAACCACCACTACTTCCACCAGTTGTTG 2250 29 100.0 36 ............................. ATTTTAATCTTTGACCATACTACTATTTCTCTTTTA 2315 29 96.6 0 ..........G.................. | ========== ====== ====== ====== ============================= ====================================================================================================== ================== 35 29 99.9 38 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : TTAATAATGAATCAGTTCAGTTTG # Right flank : TTATGATGAAAAATGAACAATAAAAGATTCAGCTATTGTTTTATATATTGTAATTCAATAAAATTATAATAAGTATGTTATAGAAAAAAATATATGACATAGTGATGCAGCACATCAAAAATTATTTAAATATATATAGAATGACTAGCAATGGATATCTCTTATTATTTAATTTTAATAAAAATAAATAATAAGAGTGAAAAATATTTTATATAATAAACAAAATATTTGAAGATAGAGTATAGTTGATACGTTGACAAGGAGATAAGGAATAATGACTTTACAACAATTAAAATATGTAGTAACCGTTGCAGACAAAGGAACAATTAGTGATGCAGCTAAGGAATTATTCATTTCTCAGCCTACAATTACTAATGCTATTAAAGATTTAGAAAAGGAAATGCATATTACTATATTTAATAGAACTAACAAGGGAATTGTAGTTTCAAATATAGGAAATGAATTTCTTGCATATGCAAGGCAAGTACTTGAACAAGCTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //