Array 1 19230-19457 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJKE01000129.1 Bacillus cereus strain B4088 scaffold73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 19230 29 100.0 37 ............................. TTGATCCACCTCTACAATGTGATAACGGCCATTATCC 19296 29 100.0 37 ............................. TTTAAGTCATTATATGACACCGTATGCTATGTGGATT 19362 29 96.6 38 .........G................... TCAAACAAGATTACAACTATTGAACAATGTCGTCAATC 19429 29 93.1 0 .........G...............T... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 GTTAAAACATAACAATAGATGTATTGAAA # Left flank : CCTATACAAGTCAACGATGTAGTGAATGTGGGTATATCCATAAAAATAATCGGCAAAATCAATCTACCTTTGAATGTCAGCAATGTAGTTTTAAAGTTCATGCAGACTACAATGCTGCCAAAAACATTTCTGTGTACAATATTGAGAAGGTAATACAAAAACAATTGAAGTTACAAGAAAAATTAAATTTAACAAAATATAAAGAACAGTATATAGAGCAGATGGAAAATATTAATTAAATAAGGTAGTAGGTAGTAGTTTGGCGGATTTCCACGCCATAAATGGAGAAGTGATACACGGTAAATTTACCAGGTGTATACGCTCCATAAGGTAGTATCGAATGTTAAAAAACATTGATACATAGGCATCTTGAATGCTTTGAAGGGTGTAACACAAAGACCGTTACATAATACATTAATTTGCTGGTAAAAAAGCAGGATGTTGTTGATATACAAGGGATTGTCACAATATTCGTTATTAATCATCTATCTATTATCGGG # Right flank : AAGATAACAAATCATTAAGAAACCCTGGTTGCAAGAGTGTAAATTATTAAATTTTTGGTGAATTTCCACGCCATAAATGGAGAAGTAATACAAGGTGAATTTACCAAGTGTCAACGCTCCATAAGGTAGTATCGAATGTTAAAAAAACATTGATACATAAGCATTTTGGATGCTTTGAAGGGTGTAACACAAAGACCGTTACATAATACATTAATTTGCTGGTAAAAAAGCAG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACATAACAATAGATGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 72209-71919 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJKE01000104.1 Bacillus cereus strain B4088 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 72208 29 100.0 36 ............................. AAGTAATGCAAATCCGTACAGGTGGACGCCCTACAA 72143 29 100.0 36 ............................. TTCTAACCGGATTGGTGAAGAACCGCGTGGGTAATT 72078 29 96.6 36 .............C............... CACAGAGATTATTCTTCAAAACGTTTTGAGGTGGAA 72013 29 96.6 37 .........................G... TTTAACGCAGCAATCATCGATCTCATCGCGTCATCAG 71947 29 82.8 0 ........C.A............AA...A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.2 36 GTTTTATATGCACTATGTGGAATGTAAAT # Left flank : TATCATCAGTAATAACAATATACCTATTAACTTTAATTAATTTCTCATTTCAATTAGTGATTGAAGAAATTAATTGTAGGTTTATACATGAGGAATAGAAAGTTTATATAAGAGAATGATACGTGCAATTTAAACTAAAAAGAAGTAACCAACATGAGTTACTTCTTTTTCTTATATTTAATTGAATGAATTACGCCCTCCTTCACTCCGTTTAGAGAATGGGGGCAACTCGGTCAAGTGATAAAATTGCCTACCCATTCTGATACATCGTGAGGTAACCCTGTTTTTTCTTCCTGTTTTTTTAGAAGTTTTCTCATTTTGCAGTAAACCTAAAATTTCTAAAAAACATTGTATCCCTTGTCGCTCTAAGTACAAACAAACCTAACAGTGTTGTTCTTCGAACACGATGTTAGGTTTACTGCAAAACACAATCTGTTATACTATTAGTAAGCGCGTAGAATGCTTGTTGTTATTAGGCTTTCTAAGTTCAAATTTGCAGG # Right flank : CTACCTGCTATTTTATAGATAGGGTAGTTTTTTTCGTTATTACTACCTAACATAAAGGTAAGTAAAAATATTTAAAAACTAACAAATTAGCGCGATATTATTATCGACGCTTTTTTTAGTCTGTGATTATGGAGGTGGCCATATAAGGGTTACCTGTTTGTTTTAAATGGATAGGAGAGGGTTATATGAAGCTAATAGAGTCTAACAAATGGGAATTTGAAGGGCTGGAGATTCAGCCACCTAAATACTATGTACGAAAAATTACAGACTGTGAATATATGCTATACAGAAAGATAGAAGAAGGAGAAGAGTTTCCCCTTGATAAAACAGAACGATTGTATCATGACGACGATACATACTTACTTATAGGTATTTTTGATTCCGGTGAAGCAGTGATGAAAGCTGTGGAAACATATTGGAATGCTATAAGACAATTGAATACGATGATCTAATTAAAAATTGTAATAAAAAAACACTTTCCCTAAACATAGGATGTACTA # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGCACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 74087-73936 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJKE01000104.1 Bacillus cereus strain B4088 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== =========================================== ================== 74086 22 100.0 43 ...................... TTCTTTCTGGGTTTCTAGAACCTAAATACAAAGTTTGTATTTA 74021 22 100.0 42 ...................... GAATTAAAGAACGCAACTATTACTCGTGAGGGAAAGTTTTAT 73957 22 90.9 0 ...............A..G... | ========== ====== ====== ====== ====================== =========================================== ================== 3 22 97.0 43 ATGAACTATGTGGAATGTAAAT # Left flank : AATAATGACCATGCTAAGATTCGCTATGCAGAAGAAAAAATTCTGATTGGTTGATTTAGAATCAGTTCTGTACTAAAAATTGGCGGAACGAAGAGGTGGTTCAATTAGTTTAACTATTTGAGCTGCCTCTAGTTATAAGTTCGTGAAGTGAATCTGATGGCACCCTAAATAAGGGGGCCACTACACTTGATTTTTTTTCAATCAGGGATTGATGTTTTAGATACCAAGGGGATTTATATATGATTTCCCTCTGCTAATAAACAGGGATCAGACCCTTTTTTGTTTCTGCTTTTTTAGAAGCTTTCTCTTTTTGCAGTGAACCTGAAATTTCTAAAAAAGCGTTGTATCCCTTGTCGCTCTAAGTACGAATAAACCTAACAGTGTAGTTATTCGAACACAATGTTAGGTTTACTGCAAAACACAATTGGTTATACTATTAGTAAGCGCGTAGAATGCTTGTTGTTATTAGGTTTTCTAAGTTCATGTTTGCAGGGTATTTA # Right flank : TATCAATTTTTTGAAAGAGGGTTTTCTTGATTTTAATTGAAAGTAGCCTATAATATAAACAATGGAAATTTCCTTTAACCTGCTAAGTTGGGATGGGGAGAATTTGTCGTTTATGGTATGATTCTTTTCTGATAGGTTATATGACATTCGGGTGCGGCTCTCGGATTCTCTGCGTCGGAGACAATAAATATGAGACGATACCTAAAGCCGATTTTGAATTCAAATTGTAACGATATAGGTAGTGCCGTGAATAATTTAAAACAGATTGCTCGTTAAGAGTGCGCTAAAATATTTTTAGTTGAGTGTTCGTTGAGAACAAGGTTTACGGGATGCAGATAGGTAGATACCTGTCGAGATGATACTTAGGGGTCTGAATGTCTGCCAATGGTCACTCTCTCGAGGGTAGATAAGTAAGAATGGTTTTGCACCATTAGTTTTAGGTTAACAAACGGTTTATACGGCGTTTGCTAACGACAAGGACTTAACTCAAAAGGTTAAGT # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 75669-75954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJKE01000045.1 Bacillus cereus strain B4088 scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 75669 29 75.9 34 .C...G.GGTG..............G... CAGTTAAGGTGGAAACTTTGTTGGACACACTCTA 75732 29 79.3 37 ..TG...AAG.............A..... CTGCTTTCCAAAAAAAACACACACTTTTGTGACTAAC 75798 29 100.0 31 ............................. ACGTAGCACTCGATACAAGTTCGAACCACCG 75858 29 82.8 35 .C......ATT.................A TTATTTTATGCTTGATATTATCTAACCCGTCTTTT GAGG [75863] 75926 29 62.1 0 C.T..TAG.GT....C.......C.G.T. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 80.0 34 GTATTATTTAAACTATGTGGAATGTAAAT # Left flank : ATTCCTTAGAGAAGGTGAACTAACTGATATTGAAGAACAGAACGCCTTATGGGTCCCTTCCGTTTTTGTTTATTTGTATAAAGATTGGGACGATGTATTACCGGTAGACGAGGACGTCATATTTGCGCACTTTGGTAGTACAGGGTGTTTGAAAACAAATGGTTGAATATCCTATCTTGGTCAGATCCTATTATCCTATATACAATGTGTATGTTTGCGTTTAATGAGGTGATTAACATTGAAATATGAGGTTCCTAAATGTAATTGTGGGAAATATTTATTTATTACTTCTCATACTGTTAATGTGGTTCAATTTAAAATCAGTGCAATAGGGAAAAAATATATGAAACCTTGGACCACTGAGTTCAAAGAGAATTACACAGAGTTATCTGAATGGCTTCAGTGTAATACTTGCTTAAAAAGATATGAACTGTATACAGAAAAAGGAAAAGTCTTTAGAGGTGAAGAATTAGTATAACTCTTCAGGGAGTTATACTGCT # Right flank : TCAATTCTTGTTGTTTTACCTACTATTAAATGTTGAATCATAAAAAAAGTTCTATTTAGCCAAAAAGGTTAAATAGAACTTTTTTGATAGTCATTCTTCATTCTGTTATATCTTGTATAAGAAGTGAGACAATTGCCTCTTGATAACCTGCCTTTTTCACTTCCCTCATCGCACTAGTAAGTTCGCCCCATTCAGAAGATGTAACCCCATCTAATTTCGATAAGCGTCCGGATATATCTTCATCGGATACACTCATTTCATATGCTTCTTTGTTCATTCTCCATAAGACAACTTTCTCTTTATATCGCTTCATTAATTTATCGGCAATAAGAATCCCTTCGGGGTCTAAATCACCTGAATAATGAAGAGTACAGTTCGATTGGACAAGAAAGTCTAATAATCTCCAACTTGCCGTTCGAAGTTGACCATGCGTGCAGACAATTGCAGCGTTTGGCACTGCATCCATTATTGTCGAGCATACGCTGGAGTTTTCAACAACC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.00, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATTTAAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 20732-20568 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJKE01000122.1 Bacillus cereus strain B4088 scaffold54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20731 30 96.7 37 .........T.................... TATTACCCACAATATATTTTGCTCCTTTCTATTCCTT 20664 30 100.0 37 .............................. TGGGGAGACGCTCGGCACTTCACAAAATCATTGCGAA 20597 30 76.7 0 ...T......C..G......A...A.G.G. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 91.1 38 GTTAAAACAAAACAATAGATGTATTGAAAT # Left flank : AACAATAGATGTATTGAAATATGTATTGTTTTTATAAGGCGATAAGAGAAACT # Right flank : CTCATTGAACTTTGATTCGATTTGTATATAAATAGAGTAAATGTTATTATATAAGTAATCCAATACTGAAAAAATCATATTGCAAAAGGACACACCTACGCATAACCATAGCGTAGGTGTGTCCTTTTTTTGTTTAAGGAGGAAAAAGTTATGGGGAAAACATTATTTATTGCAGAAAAATCAAAAGTGGCCAATGAAATTATGAAATCGCCACGATTCCGTCACTCACAAAAGTACATTGGTAGCAAGCCTTATTATGGTTATTATGAAAATGATCATTATATTGTCAGTTGGTGCCGTGGACATTTGCTGGAACTAAAAAATCCGGAAGAGATGGATCCAGAGTATAAAATGTTTAAGTTAGAACATTTACCTTTAATTTATCAGCCAGCTTATAAAGTGATACAAGAAAATGCTGAACAATTACAAATCCTTGTTAAACTACTGCAACGTCCTGATGTTGACCATGCGGTGAACGTATGTGACGCGGACCGAGAGGG # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACAAAACAATAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //