Array 1 110438-107967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXG01000003.1 Salmonella enterica strain BCW_6238 NODE_3_length_354689_cov_3.35368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110437 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 110376 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 110315 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 110254 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 110193 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 110132 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 110071 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 110010 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 109949 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 109888 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 109827 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 109766 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 109705 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 109644 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 109583 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 109522 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 109461 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 109400 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 109339 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 109278 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 109217 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 109156 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 109095 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 109034 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 108973 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 108912 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 108851 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 108789 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 108728 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 108667 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 108606 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 108545 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 108484 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 108423 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 108362 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 108301 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 108240 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 108179 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 108118 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 108057 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 107996 29 100.0 0 ............................. | A [107969] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129920-126983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXG01000003.1 Salmonella enterica strain BCW_6238 NODE_3_length_354689_cov_3.35368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 129919 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 129858 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 129797 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 129736 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 129675 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 129614 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 129553 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 129492 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 129431 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 129370 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 129309 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 129248 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 129187 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 129126 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 129065 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 129004 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 128943 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 128882 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 128821 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 128760 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 128657 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 128596 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 128535 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 128474 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 128413 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 128352 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 128291 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 128230 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 128169 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 128108 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 128047 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 127986 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 127925 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 127864 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 127803 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 127742 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 127681 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 127620 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 127559 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 127498 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 127437 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 127376 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 127315 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 127254 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 127193 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 127132 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 127071 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 127010 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 48 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //