Array 1 1901-1513 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKWR01000225.1 Providencia stuartii strain AS012334 AS012334_225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1900 28 96.4 32 A........................... ATAGGTGTCATCGATAAGATGAATTTATTCCC 1840 28 96.4 32 ..G......................... GAACCGTGAAAGCATATCGTATTATTGGAGAA 1780 28 100.0 32 ............................ AGATAGATTTTGGCTTGATGTCACCATCAGCG 1720 28 100.0 32 ............................ TTTAGAAAAAAGAAAGCCCCGCACTTGCGAGG 1660 28 100.0 32 ............................ TCCTGCTAGCCACCAATCCAGTGTCGGATAGT 1600 28 100.0 32 ............................ TTTCAGGCAATATCGAAAAATACACTCCTAAT 1540 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAAGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTAT # Right flank : TACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACAGGGAGATTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13380-14007 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKWR01000113.1 Providencia stuartii strain AS012334 AS012334_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13380 28 100.0 32 ............................ ATTATTTCTGCAAAGCGAACAATGCGATCCAT 13440 28 100.0 32 ............................ TATAACAGGCTGTCCTCTGAAGTCGCTTTTGT 13500 28 100.0 32 ............................ AGTGCCAAGAGGTACAAATATCTGAATAAACG 13560 28 100.0 32 ............................ TGACTTCGATTGATACTTTTATTCTGATTAAT 13620 28 100.0 32 ............................ CGCTTGCGATGCCGGAAGCGGAAAGTTGAGCG 13680 28 100.0 32 ............................ GTTAACAGGCACAGCAACCGCCTCGTTAGCGG 13740 28 100.0 32 ............................ CAACCTCCTGAATACACGGCCTCCGGTGCATA 13800 28 100.0 32 ............................ TCCATTGCGGGGGTGGGTGGTTTATTTGAACT 13860 28 100.0 32 ............................ AAGTTCGGAGGGATTGAACGCCAAAAAACGCT 13920 28 96.4 32 .......A.................... ACGACTGTGGAGATGAAACAAAAATAATCCAA 13980 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.3 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAGCCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAGTTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTTCCTTTAAAAATAATAAGTTATATTCTGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : ATTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGTTGGCAACACCAGAGAAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30115-30383 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKWR01000039.1 Providencia stuartii strain AS012334 AS012334_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30115 28 100.0 32 ............................ TGTTTATCATTTGGCGCAACAAACGCCGCGAG 30175 28 100.0 32 ............................ TATTTCAACTTCCCACAACGCCATTGCAATGT 30235 28 100.0 33 ............................ ACACACCAACATCAAGGCCGGCAATAACTGCAT 30296 28 100.0 32 ............................ ATTAAACAGCACCCGAATTCCATCTGCATCAA 30356 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGCTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAGCTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGTGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATGAACGTTTCCAAAACAAACGCATTAAGCAAATTGATGAAGAAAGTAAGTCAATTTACTACGAAAACTACGAACCCTGCGACGTTCCTGATTCACGTTGGATTGATATGCTTGTCGAAATGCCAAGTAATTTAATCTACAATCAGCGACAAGCAGAAGCAGAGCGATTAGCAAAAGAAGCAGCAAAGAGAGATGCTAAGCTTGAAGCTGCATCACAGATAGAGGACAATAAAAATTAATGCGCCATCTCGAGTAGTTGGCGCATGTGTATATTTATTCTTTAGGGTTTGAGCCAAATCGGTTGTTACCTGGGGTTCCATCAAGGCATGTAAACACAAAAATGACAAGACCACCAAAAGGTATAAATGTGAGCAAATACCACCAACCTGACTTATCTATGTCATGTAAGCGCCTAACAGTTACTGCAAGGCTAGGTATTAAAATAGCTACGCAATAAATCATCAGGAGGACTAGAGCTACGATCCCCAAACCATTTATAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5202-5649 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKWR01000155.1 Providencia stuartii strain AS012334 AS012334_155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5202 28 100.0 32 ............................ TACCCACGCCACTCTATTTATGTGATTTAACC 5262 28 100.0 32 ............................ TATCGCAAGATGGTGCTTAGAAGCTAACGGAG 5322 28 100.0 32 ............................ ATTCAATAACGTTTCGGGAGCCGGAGGCTTTT 5382 28 100.0 32 ............................ TTTGGTTCATTGAATACGGGCGATATGCTGAC 5442 28 100.0 32 ............................ TTTCATTTCGTTAGTGACTGTGCCACCTTCGC 5502 28 100.0 32 ............................ AGAGGGTCGCGGGTGGTTTGTTGGCGGTATCT 5562 28 100.0 32 ............................ ATTGCATCCAACGACTTGAAATCGCCTTTTTC 5622 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGTAGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAGGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCCCTTATTGTAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTATTACTTTTGAAGAGATTGTTTTATCCGCAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAACAATAAAATTAATCGGTGAGGCAGGATGAAACTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGTAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGCGAGATGATAGGCTGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15577-15007 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKWR01000054.1 Providencia stuartii strain AS012334 AS012334_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15576 28 100.0 32 ............................ CACTGTTGTAACATATCGCGGCGCTGCTCTGC 15516 28 100.0 32 ............................ ATGATTCATGTTGTCAGTTTCTCTGGCGGAAG 15456 28 100.0 32 ............................ GTTATTCGTCGTTTATTTAAGTACCTCCCAGT 15396 28 100.0 32 ............................ TGAAGGTCAAGCACAAGCGTTAAACGGTTACT 15336 28 100.0 32 ............................ ATTTAATTGGGTATTATTTTTAATTAAGTTAA 15276 28 100.0 32 ............................ GAAGTTAAAAAGTGGCAAAACATGGCTGAAAT 15216 28 96.4 33 ...........T................ AAATTCCCTTCCATGCCGAACGCCCTGCAAACT 15155 28 96.4 32 ...........T................ AAGAGTATTAAATATCAACGTTCTAAGAATGG 15095 28 96.4 33 ...........T................ TTTTGCGGACTCTTCTTTCAACTCATAATAATT 15034 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAACTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AATGAAACATCAACTTGATTTTATATATTTTTCAAGGTGACCATTTTGGCTTGTTTTATAAAATACAAAGGTCGCTTCTAATTCTTCATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATTAATCGACTTTGTAAATACAACTGGTTTATATGAGGTACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGCTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTCAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTGTGCGTTTAGGCTTCTTTTCCGTCCGTTAGATGGCCCATTATCCGGAGGAACGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCATTTATTATCAACGATAGCCCTTGGTCAACCTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18703-19330 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKWR01000068.1 Providencia stuartii strain AS012334 AS012334_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18703 28 100.0 32 ............................ ACTGGATCGATGTTCGCGTAAACATGCCGAGT 18763 28 100.0 32 ............................ GATTATGAGTGATGGAAGTGTTACGGCAAGGG 18823 28 100.0 32 ............................ ATTATGAGCGTCAAGTTGTACTCACACTGATC 18883 28 100.0 32 ............................ TTTTACGGTGATCTGGATGGCTTCGTTAGCCG 18943 28 100.0 32 ............................ TGAAGACCGGCTTGAGCGTTGTTCTAAACAAA 19003 28 100.0 32 ............................ ATCAAAACCAGCCTCCGCTGTCGCTTCGGCTA 19063 28 100.0 32 ............................ ATTGTTGTTGTGAAGATGACATATTTAGCCCC 19123 28 100.0 32 ............................ TGCAATTGGAAGTTATAACCAAGGGAACTAGA 19183 28 96.4 32 .................T.......... TCGAAGATTTGGGTCACTTGGTCATCTGTTCT 19243 28 96.4 32 .................T.......... ATCGACTTGAATAATCCAGAGGTTATGTATTC 19303 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGCAAGGCTTAGTTAAAGTTGAATTATTACTTGATAAACAAGAAATGGAGATGCTCACAAGGAACTGTGCATTACGTAGACCAGGAAGAGAGCCATATGATATCGCTGAATATCTCTCAATGTTGATTAGAATTGATGACCGTTCAGCGATATATTTGGTTACAGAACTAAATAAAAGGCGCTGTAAAAAGTGCAATGAGCAGTTGCCGGTATCTGAATGTTGTTTAAGTGGTGATCATAAATGCTGGGTAACTCATGGATGGCATGAATTAAAGTTGATGTAACAAAGCATCACAGATAACTCAAATTTAGAGTGTCGCTATTAATTTTGATGGGTATAGAAGATGTGCTGTTTTCCTCTTTTTTACCCTTCATTTTTCCACCTAGAAATTATTTGTTAAAAATCAATCTATTACACCATGCTGAAATATGGAAGGTATTTCTCATAAAATTAGGTGTAATTTATTGTTGAATATGGTTTTTTTCATGATAAGTTATA # Right flank : GTAATGTTTGATAGCATTAACTGGTTATATAACCATGCTTACTGTATAATTTACTTATTGGTCTGAACACCCAATCATAACACTTGCTGTGTCTACTGAGAGAAAAAGTATGGCACAGCATAGCTTTATTAAAATGTCTAACGACACTCTTGTACCGGCTAATCCCGCTGCGAGAGATTTCCTGCATTCAAAAATCAAGTGTGGTGATGTGCTTTCGGCTGATTTCAAGAAAGCTCGTAACCCACGTTTCCACCGTAAATACTTCGCTTTACTCAATCTAGGGTATGAATACTGGGAACCAACAGGCGGCACTATTTCGCCTGAAGAAAAAGAGTTAGTGCGTGGTTACGTTAAATTCCTCGCTTACTACACTGATAACGACGATGCCCTCCAATCTGCTGCGGATGTTTACCTCGATGAGATAGCACAGAAACGTGCTCACAATATATCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTGGTAGAGCAATCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //