Array 1 21350-20666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFERF010000042.1 Staphylococcus sp. GDQ20D73P GDQ20D73P_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 21349 36 100.0 35 .................................... ACTTCTTTAACGATTGTCATTGTATTATATTTATT 21278 36 100.0 39 .................................... TCTAAACCATATCCCAAAGTATCGAAAATGTTTTGATCG 21203 36 100.0 35 .................................... TCTTTTAATTCTTGCATTGTGAAAGTAATTTCTTT 21132 36 97.2 35 ................................A... TTATATTAATCTCATCTTTATAATATATATTTATA 21061 36 100.0 34 .................................... TTTTAACCCGTTGGAATTTATTACTTCGATATGA 20991 36 100.0 35 .................................... ATGAAGTCAACTCCACCAGTTGCGAAGAATATTAC 20920 36 100.0 37 .................................... GTTGATTGCTCGCCGATATAGTCCATTGTTTCATTTA 20847 36 100.0 36 .................................... TCAATCTCTTTAACTTCCCAAAGGTCATTAGTTATA 20775 36 97.2 38 ............A....................... TCCATACCTACTAGTGTTGTAATTTCGTATCTCATTTT 20701 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 99.2 36 ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTGGAAAAAAACATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCTTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGCAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCGCTATTTTTGACAGCAAATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAGCTATCT # Right flank : TAAATTTTGAAACTCATGTGTTCCGTCGAATTCGTCATTCAATAACCACTTTGTATAAGAGTGGATAATAATTTATAATTTCGTAGTTAACTTGATTTACAAATACAAAAAATTTCATTTGCATTTAAAAGTAGAAATTAATTAGTTTAAATAATAAAAAAGTAGTGAAATTAATAAGATATTGGAGGAGGGATTAAATAGTGGAGAATATTGATGGCAATAAAATGAATAATATTTTAGATTGGGTTTATGAAAAAAATCTAAGTGGATTACCAGGAACTTATTCAGCCAAAGAATTAGCAAATAAATATGTAGAAAAATATAAAGATGAAGACAAAGCTATTAATAAATTAGTAAAAGGACAGTTAAGTAAAACTGGAACTTCTGGTTTCATTACAGGCTTAGGTGGTATAGTTACACTACCAGTAGCACTCCCAGCAAATATAACTTCAGTTGTTTATGTGCAAATGAGAATGATTGCAGCCATTGCTTATATAAGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 30485-30308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFERF010000042.1 Staphylococcus sp. GDQ20D73P GDQ20D73P_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 30484 36 100.0 34 .................................... GTGTAGTTAAATTTAATATTTTTTAAAATGTTCA 30414 36 100.0 35 .................................... CTAATCTCACCTTTCAATTTACTAATTTCTTTTGC 30343 36 58.3 0 .....................NNNNNNNNNNNNNNN | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 86.1 35 GATCGACAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : TTGATTAATCGATTTAATAATTCTAACGCAACATTTTTTTGTTTCAGTCATTCGACATCTTTTAAAAAGTCATCAGACAGGATTGGTAAATCGGGTTGTTCAAGGCCTAGAGTTTAATAAGTGTCAAGTCAATGAAATCTTCAGTTAATAGCGTATATTTGATTATTATTAGTTTAAACATATTAAAATTAAATACTTATTATATATGGCTTTTTTATTATTTTAATATAGAAGTATATTTTACTTTCCTGAACAGTAGTTATTAAATTTATCTTTTATTTTAAATTAGAAAGGAAGAAAATGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTTTTAATATAAGGAAAATCATCATAATATTTGTCAAAAAAAGTGACATTTTATATAATAGCATGGTGTTAGTTGTCACAATTTTTGACAGCAAAAATAATAATTGAACCCTTGTGGTTATGCTAATTATTAAAGTATCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGAATAGGGGACGAGAACTCCATAGTTTTTAATACGTTTAATAAGTTTTTCATGATCGACAACTACCCCGAAGAATAGGGGACGAGAACCAAAAAATTCGATTAGTTGCGTGTTGTCCTCGTTGTGATCGACAACTACCCCGAAGAATAGGGGACAGAGTGTAAATTTAATAACACTTTAAAAAATTGTAAATTTTTAATGAAAAACGTATTGATTAATTTTTAGGGGTTGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTATTTGAAGAAATAGAAGCAATTATTTTTGATCATTATAAAAGTTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATAATATT # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGACAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //