Array 1 164811-165318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEW010000004.1 Pectobacterium brasiliense strain IPO:4056 NAK:264 GBBC:1756 EJAPCGFI_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164811 28 100.0 32 ............................ ACTCTGTCCACTGATTTACATCTCCGTTTCTC 164871 28 100.0 32 ............................ GCTTACCGTGATATCGCGGGAGTCTGGACGAT 164931 28 100.0 32 ............................ AGCAAAAATCACTCTGGCGTACGGTAGTGAAA 164991 28 100.0 32 ............................ ATCCGGCCTTATGAGCAGTGCGGAGGGCAGAA 165051 28 100.0 32 ............................ AGGTGAAGAGGTTTTCTGTCGCTGTTATGTGA 165111 28 100.0 32 ............................ GTCTGCGCGTTGTTGGCAGCCAGAAGTGAAAG 165171 28 100.0 32 ............................ GGGAAAATCGCGCCTTGAGTTTTACGACGCAC 165231 28 100.0 32 ............................ AGTCGCTCAACGTAAGCCCCGCGATTTTCTCA 165291 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGACACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 172813-171225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEW010000004.1 Pectobacterium brasiliense strain IPO:4056 NAK:264 GBBC:1756 EJAPCGFI_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 172812 28 100.0 32 ............................ AATAAAACGCAAGGAATAATCGCGTTTTATCG 172752 28 100.0 32 ............................ ATGCGTCCTTCTGCTGCTCAAGGGCTTCGACG 172692 28 100.0 32 ............................ AATAGTGTGGAACAGACCGCGCTTTGCGCCGC 172632 28 100.0 32 ............................ TGTTTGGCGGCGCGTACTACCAACTCCGACGC 172572 28 100.0 32 ............................ GGAGAAATTATACAAGAACTGGTGAAGTGTCA 172512 28 100.0 32 ............................ AGGCTTGTATCCGCGCTCGGCTTCTATGCGGA 172452 28 100.0 32 ............................ AGTCTGCCGGATAACCTGTCTGTCGGTGGCTC 172392 28 100.0 32 ............................ GCCAGATTGCATCGCCAACACATCCAGGTGGG 172332 28 100.0 32 ............................ ATGACATTGGGCAATACCGCAGGGTTAATTGC 172272 28 100.0 32 ............................ TAACACGCGGGTTTTGTCCGTCGCCTGTATCG 172212 28 100.0 32 ............................ TGCTAAGCCGATCCGGGCTTTCAGGCCACACC 172152 28 100.0 32 ............................ ATTGCGACACCGGCGATCAATTTCGAGCTGGC 172092 28 100.0 32 ............................ GATTGCATCAGCAGCTTTCGCTTGACCGTTCT 172032 28 100.0 32 ............................ GAATGATGACCTCGGCGGTAGTGTAACGTTCG 171972 28 100.0 32 ............................ TGCGCGGTGCGGGTGTAGTTCTCAAACAGGAA 171912 28 100.0 32 ............................ GCGTTTCTTCGGTGATGGCGGGATGAATGTTT 171852 28 92.9 32 ...........G.T.............. TAAAAGAAAAGCGCGAAATAATCGCGTTATGG 171792 28 92.9 32 ...........T.T.............. AGTTTTCTGAACGCTCATCAGCAGACACATCA 171732 28 89.3 32 ........T..T.T.............. GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 171672 28 92.9 32 ...........T.T.............. TTACGCGATATCCGCGCCAGCTCGGTTTCTCC 171612 28 92.9 32 ...........T.T.............. AAAGAGCTATTTATGGGTGCGCAAACCGCTGA 171552 28 96.4 32 .............T.............. TGAACGGACAATGCAGGGAGATCGGCACCTGC 171492 28 96.4 32 .............T.............. GGACAACTGGAGCATTGCGGCGCGGCAGTGGT 171432 28 89.3 32 ...........GTT.............. TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 171372 28 100.0 32 ............................ TCTGACGTGCATGCGTTCACAAATTCGGCCAT 171312 28 92.9 32 ...........A.T.............. AAGAGATACAAGGATGTTGCGGCGGTATTACC 171252 28 78.6 0 ...........T........T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 27 28 96.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCTGGCTACA # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCATCGTTAAATAACGTATTTCTGATTCCCCTTTCTCGTAACATTTTTAAGTAATGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGACCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 181736-182720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEW010000004.1 Pectobacterium brasiliense strain IPO:4056 NAK:264 GBBC:1756 EJAPCGFI_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 181736 28 100.0 32 ............................ TGCGCGATGTCCTGCGCACTCTGTCCGGGCTG 181796 28 100.0 32 ............................ GCCCCTGTCAACCAAATATGAGGCCGCCATTT 181856 28 100.0 33 ............................ GTTAAAATTTCCCCAAGCGATGTTGCAGGACAT 181917 28 100.0 32 ............................ AACATTGTTCACTGCCGTATAGGCAGCTTAGA 181977 28 100.0 32 ............................ TGGCCAATGCTCAACCCCATTTGCTGATACGT 182037 28 100.0 32 ............................ ATATCAGCAATGAACGATGCTGCAAACGATTT 182097 28 92.9 32 ...........C.....C.......... CGCGCTAATAGCATTGCCGCTAATATCACTGT 182157 28 92.9 32 ...T.............C.......... CTTGTTTCTTTTACAGTATGTGAAAGGTAATT 182217 28 96.4 32 .................C.......... AAAGTAGTCGGTGGTCGCCAAGTCATCATCGC 182277 28 92.9 29 ...........C.....C.......... ACGGTTCGCTACGCCGCCGCCGGTGCATT 182334 28 92.9 32 .................C.T........ CGAGCAACACAGTATTCATCGCTGTGGAAAAT 182394 28 92.9 32 ...........C.....C.......... CGCTCGCGCACCTGGCGTCAAGACCCCGATCT 182454 28 92.9 32 .........T.......C.......... GTCCTGCCAAGCCATAACGGGCTTTCCGGCCA 182514 28 92.9 32 ...........C.....C.......... ATCAGATAATTTCCTCATCAAACAGCAGTTCA 182574 28 89.3 32 ...........C.C...C.......... ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 182634 28 96.4 32 .......A.................... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 182694 27 71.4 0 ............GC...C..-..C.GCG | ========== ====== ====== ====== ============================ ================================= ================== 17 28 94.3 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAGAAAACCATATTCTCTTTAACAATCTGGTGGTTATCGAAAAAATTCAACT # Right flank : GATTATCGGGATGCGTCGCTGGTGCGACGCATTTTTGAGGACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATAGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTATGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGGGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAAAATCGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //