Array 1 426970-428095 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUT01000002.1 Salmonella enterica strain CFSAN071968 CFSAN071968_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426970 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 427031 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 427092 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 427153 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 427214 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 427275 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 427336 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 427397 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 427458 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 427519 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 427580 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 427641 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 427702 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 427763 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 427824 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 427885 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 427946 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428007 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 428068 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444354-446460 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUT01000002.1 Salmonella enterica strain CFSAN071968 CFSAN071968_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 444354 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 444415 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 444476 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 444537 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 444599 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 444660 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 444721 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 444782 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 444843 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 444904 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 444965 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 445026 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 445087 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 445148 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 445209 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 445270 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 445332 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 445393 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 445455 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 445516 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 445577 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 445638 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 445699 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 445760 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 445821 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 445882 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 445943 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 446004 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 446065 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 446126 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 446187 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 446248 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 446309 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 446370 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 446431 29 89.7 0 A...........TC............... | A [446457] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //