Array 1 2312-2509 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYL01000162.1 Pseudoxanthomonas sp. SGD-10 163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2312 46 100.0 30 .............................................. TGTTTCATAATATTTAAAATGGCTATTTAT 2388 46 100.0 30 .............................................. AATACTCGTGCTTCTTATCAATCTTAGTTA 2464 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 100.0 30 GTTGTTCTAAATATCAGTATTTCAAAGATTGAAAGCAATTCACAAC # Left flank : AAGGAGAACTCCCGTTTTAATGTATGCGCTTAAATGAATATCGTATTTTGTGGGTATTAGTATTTTTTGACCTTCCGACCGAAACAAAAAGCGACCGGCAGATATACGCCAAATTCAGAAAGGATTTGCTGCGTGATGGCTTTGCTATGTTTCAATTTTCTATTTATTTAAGGCATTGCAGCAGTCGAGAAAACGCGGATGTACATATCAAACGAGTAAAAAAGATGCTACCATCTAAGGGACATATAGGCATTATGACCATCACCGACAAGCAGTTTGGTATGATGGAACTTTATTATGGTAAGGAAGAAAAAAGTTTACCTAATACACCTCAACAGTTAGAGCTTTTCTAGAAAGAAACTAAAATTCACTTTACTATGACACTCGTTTAGAAAAATAAAATCTCTAAAATAGAAAAATCCGACATTATAAACATCGGATTTTTTAAATTCTGATTTTAGACTTAATTAACTGATATAAAAACACTTAAATCGAGGTAC # Right flank : ATATTTTTTTAGATGACCTACCACCACGCCGTTGTTCTAAATATCAGTATTTCAAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCTAAATATCAGTATTTCAAAGATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 80456-83662 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYL01000007.1 Pseudoxanthomonas sp. SGD-10 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80456 29 100.0 32 ............................. AACGTTGACCTGCCGCTGGGCTACCAGCGCGA 80517 29 100.0 32 ............................. GGCACCAGGACAGCGCCAACACGTGGCAGCAC 80578 29 100.0 32 ............................. ACGTGGGTGCTGGCTGACTCCGGCACCACGAC 80639 29 100.0 32 ............................. GCGACATTGGCACCCGCGAGCATGACGGCAGG 80700 29 100.0 32 ............................. ACCCGCGCCGCCAACGTGTCCAGCGACCACCT 80761 29 100.0 32 ............................. GCAGCAAGCGGTTCATGGGCGTGCACGGCGGC 80822 29 100.0 32 ............................. AGGATGACCGCCGCCACGCCGTGATCTGGACG 80883 29 100.0 32 ............................. AGGATGACCGCCGCCACGCCGTGATCTGGACG 80944 29 100.0 32 ............................. GTGTAGGTGTGGCTGCGGAACTTAGATTGCGC 81005 29 100.0 33 ............................. CAGGCTCCCGATCACATACACCGTGCCGTGGCC 81067 29 100.0 32 ............................. CCGTGCCTGCTGCTGTTGCTGCTGATCTGCGC 81128 29 100.0 33 ............................. AAGGACAGCAACGGCTTCACCACCCGCGCGCGC 81190 29 100.0 32 ............................. GTATCGGCTTCGGTCAACGCCGTGAAACTTGA 81251 29 100.0 32 ............................. GAACATGAGGTTCCCCCAGAAAACTCCAGCCG 81312 29 100.0 32 ............................. CGCGTGCCCTGGTTTTATTGGGCATGTGGTGC 81373 29 100.0 33 ............................. GCCGAGAAAGAGCTTGCGCGCGCGCTGGAGGAC 81435 29 100.0 32 ............................. CCGCGAACGGTGCCCAGCCTGCGCCCGATATC 81496 29 100.0 32 ............................. GTACGTGGCATTGGTGGCCGTACCCTTGAAGC 81557 29 100.0 32 ............................. GGTTACTCGCTGGCTGATGCGATCCAGAAGAA 81618 29 100.0 32 ............................. CCGACTACGCGGGGATTCAACGTGAGCGAGAT 81679 29 100.0 32 ............................. CCGACACCTTGCCGCTCGGGAAGTTGGATGCT 81740 29 100.0 32 ............................. GCGGACGCGTCCTATGTGGATCAGCTCGCCAC 81801 29 100.0 32 ............................. TCCGCCAGCACGTCCCCGCTGTATTGATCGAC 81862 29 100.0 32 ............................. GAGTATGACGCGTCAGGTGACGCGATCCCCCT 81923 29 100.0 32 ............................. AATCCAGATTCTCTCGCGCAGGTGAGGCGCGC 81984 29 96.6 33 ............T................ GCCCACGGCTGACGGACAACCGGGGCCTTCGAG 82046 29 100.0 32 ............................. ATCCTCGGCGGAGCGCCCGTCCGGGTTGTGGC 82107 29 100.0 33 ............................. TGCCCGGCGCTGGAGCCGCGCCACATGCGAACC 82169 29 100.0 32 ............................. TGGATCGCCCAGAAGCTCAACCCGATGATCGA 82230 29 100.0 32 ............................. GGGCTGTCCCCCGTCCAGTTCAACGAGGACGA 82291 29 100.0 32 ............................. CCCGCGCGCAGGTCGTCGCGCCAGTCGGCGCC 82352 29 100.0 32 ............................. GGCAGGCCGGCCAGGCGCGCGTCGCGGTAGTC 82413 29 100.0 32 ............................. TCTCGGGCCAGCGTCTCGGCGGAAAACATCTC 82474 29 100.0 32 ............................. TAGGCCGCCCAGTCCTCCGAACCCGGCCGGTA 82535 29 100.0 32 ............................. ACCACGGTGGTGGCTGCCATTGCCCGCCACTA 82596 29 100.0 33 ............................. ACCGCAGCATGGTACGAGGTGTTCCTGAAACGC 82658 29 100.0 32 ............................. GAACGAGCCATGCAGTTACTTGCCCCAGATGT 82719 29 100.0 32 ............................. TCCAGGCGGCCATGGTCATCGCCAAGAAGTTC 82780 29 100.0 32 ............................. CCGGTACGCGCAGCACCCGTGGAACGATGCCA 82841 29 100.0 32 ............................. CGGCGCGGGAGGATGCGGCGCGGTGGCGTCAC 82902 29 100.0 32 ............................. CGAATGGCCCACGTTCTGCGCCTGGGCGTCCA 82963 29 100.0 32 ............................. TTGGCGCTCGCTATCGCCTGCATGTGCGTTTT 83024 29 100.0 32 ............................. CGCAGCGCGGCACGCCGCCTGTTCGGCCAGTT 83085 29 100.0 32 ............................. GGGTTCTGTCGGGCCAGCAAGGGGGACGATGA 83146 29 100.0 32 ............................. GCGGTGCTGGAGTTCTGGGCGCGGGCGAGCGC 83207 29 100.0 32 ............................. GTGCCGGTCTGCTGGCCGATTCCCGCCCGAGC 83268 29 100.0 32 ............................. CCATCTGGCGGCTGTCGAAGAAACTGGACGTG 83329 29 100.0 32 ............................. CCGCCCAACCGGCGCCCCCTCCACGCGCCGCG 83390 29 100.0 32 ............................. TAGATCGCCGGGAACTCGGCGAACTTCTCGGC 83451 29 100.0 32 ............................. GCCGAAGCTGGCCCGACGGTGCCACTCGCCCG 83512 29 96.6 32 .........A................... ATGGTGATGGCCGCGCCGTCCGCCGGCGCGGC 83573 29 96.6 32 ..............A.............. ACCCTGCGCACCATGGCGCTGCTGCTGGAGGA 83634 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.8 32 GTGTTCCCCGCGCACGCGGGGATGACCCG # Left flank : GCGCATCATTCCGACCATCGAGGAGGTGTTGGCGGCCGGGGGTATCCAGCCGCCTGAAGCCCCGGTGGAGTCGGTGCCACCGGCCATCCCCAATCCGGAGGGAATCGGGGATATCGGCCATCGGGTGCAGGGATGAGCTTCCTGGTCGTCGTCACGGAAAACGTCCCGCCCCGCCTGCGTGGCAGGTTGGCCTTGTGGCTCCTGGAGGTGCGGGCGGGCGTATACATCGGCGATGTGTCGCGTCGCACCCGGGAGATGATCTGGCAACAGCTGTCCGAGGGCTGCGAGGACGGGAACGTCGTCATGGCTTGGGCCAGCCGCCACGAATCGGGCTACGAGTTCCAGACACTTGGCCCGAACCGGCGTGTTCCCGTGGAGTTCGACGGCCTGCGACTGGTGGCTTTCCATCCGCCGCCGGAACACGCCGCTCTTTGACAATTCAGTTTGGTAGGATTGCGGCCGCCGAATTTTCTTCGGTGCATCAGTTATTTGCGTCAAGT # Right flank : GGCAGCTAATAACGTTGCTGCGATGACCCGCGCCGCTCTGATGTTGTGCTGTGCGTTGAGTACGTTCCCCGAAAACAAGGGGATAATGACCGCCCGCAATCCGGGGGGAAGGATGCCTCTTGAGGCCTCGCTTGCGCACCGGATGACTTGCCAGCTCCCGCGGCGATGGTTCCCCCACGCATGGCTCCCCAGGGCTTCTACTTGCCCCTTGAGCCGTCGAAAGCCACGGGTCGGTTGATGTCGGCTCGCGCCAGTACACATACAATTGCGCGATGAATACCCCCTACCCCACCGTGCGGCTGAAGAACGCGTGGCGTTCCAGCCATCCCTGGATCTTCCAGAAGCTCGTCGAGAAGCCGGCCCAGCGGCCGCGCCCGGGCGAGATCGTCGACGCCTACGACGTGGACGGCCAGTTCATCGGCCGCGGCTTCTACAACGGCCACTCGCGCATCGCCCTGCGCATCCTGGAGACCGACCCGGCGGTGGCGGTGGACGCGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //