Array 1 1-363 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820126.1 Streptococcus sp. HMSC076H10 Scaffold81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 33 91.7 30 ---................................. ATTAGTCCTGTTGTTATGATGGATGATTAT 64 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 130 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 196 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 262 36 100.0 30 .................................... TATCGCAAATGAAACGGGCGCTTTTGCACT 328 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : CCTACTGTATTATCTGAAATAGTATCGTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGATATTTTTTGATAAATTCTAGAGCAATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAATAACTGTCCGTTTTGCCATTTCTTGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTAGCATGGCACAAAAATAGCGTTGGAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAATAACTGTCCGTTTTGCCATTTCTTGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGAGGGGAAAATATCAATGCCGAATGCTGAGTTTTAGAGCTGTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 585-883 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820126.1 Streptococcus sp. HMSC076H10 Scaffold81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 585 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 651 36 100.0 29 .................................... CTAGCATGGCACAAAAATAGCGTTGGAAT 716 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 782 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 848 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAATGGTTCCAAAACACACAATTAAACATAAAGAAGTGCTTATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAAACCTCTAATGGATAATATAGAACAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCAGGAGATTGTGTGTACTCACGAATTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATCGCAAATGAAACGGGCGCTTTTGCACTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTACTGTATTATCTGAAATAGTATCGTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGATATTTTTTGATAAATTCTAGAGCAATT # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //