Array 1 1375-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWN010000001.1 Bifidobacterium dentium strain UT_Austin_Bifido_FMT_C3 contig_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1374 36 100.0 28 .................................... TTGCCTCGGCGGAGCCATTGGCTTATGA 1310 36 100.0 28 .................................... ACTTCGACGGATTCAACGAGTACGCTTT 1246 36 100.0 28 .................................... GCATCGGAGGATCACCGGCTACACCGCC 1182 36 100.0 28 .................................... CCTGCCGTGAGTCGAAGTGATCCGGCAG 1118 36 100.0 28 .................................... TAATGTACGCTCGCCAAGCCATATCCGA 1054 36 100.0 28 .................................... ATCTAACCGCGTGGGCGCTACTATTCCC 990 36 100.0 28 .................................... GTTGACAAGGCTCACGACACGTCGAATC 926 36 100.0 28 .................................... TGCACGATCTGCGGCATACTGCGGCTTC 862 36 100.0 28 .................................... CGTGGGATGGCGTCGTGGTTTTCAACCA 798 36 100.0 28 .................................... TGATGCACGTCGTGCCGCTCTCGGCAGT 734 36 100.0 29 .................................... ATGAATAGGTGCGACCGTCCTGCTCAAAA 669 36 100.0 28 .................................... CGTCAAACATTTGACGAAAGGGGTATGT 605 36 97.2 28 ..G................................. CTGTTCTTGCTTGGCATTGCCCTGCTCG 541 36 100.0 28 .................................... TCAAGTCATGCAGTATCCACTCGGTCTC 477 36 100.0 28 .................................... TGGTCGGGCAGCGTTCGGCGTCGCAGGA 413 36 100.0 30 .................................... TGCATTCCACGCACACCTTATGCCCCCAGA 347 36 97.2 28 ........C........................... GGAGCCAACCTATGCCGTGCAACGTGAC 283 36 97.2 28 ........C........................... GCAGAATATGACGGTCATCACCGAGGCT 219 36 97.2 28 ........C........................... CGATCCACGAGGATGTTCGCCGCCATGT 155 36 97.2 28 ........C........................... AAGTTACCTACGGGTGGCGGTTCAAATG 91 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.2 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGGCTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTAAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : TACTCCTATTGTTGAAGGAGGCCGCGCAGCAAGTTTACCAAGAAGGGTAGAAGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 144-3153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWN010000018.1 Bifidobacterium dentium strain UT_Austin_Bifido_FMT_C3 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 144 36 100.0 35 .................................... GGTCTAACACTACCGCAAAAAGCAATGCAAGTCGT 215 36 100.0 36 .................................... AACCACCACCGCATACGGAAGCATCTTCGAAAACCA 287 36 100.0 34 .................................... TGTTTTGCATGATGGCTTTGATGATGCCGGTCAA 357 36 100.0 34 .................................... TGGACTCGTCCCACGAGCCCGGCGACATCGTCTT 427 36 100.0 38 .................................... CTTGCATACGTGTGGCTGATCTATCCTAGCTACATCCT 501 36 100.0 41 .................................... TGGCAATTGCGAAAGCACTTGATCTCACTGTTGCTGATCTT 578 36 100.0 38 .................................... CGTGGCGCTGACGTCGGTTATATCCCTATTATTTGCGC 652 36 100.0 38 .................................... GTCTTGGAACGGCGGCACTATTTCACGACTTTCTGCCA 726 36 100.0 38 .................................... GTCGCGCGCCTGCCAGCGGCTGCGTTCTCGATGAACCT 800 36 100.0 35 .................................... GGTGCGTGAAGGCAAGTATGGTACGGCTTCCGGTA 871 36 100.0 36 .................................... AGCGGTCGAATAGGTGCGTTGTTCCGCACCCGTCGT 943 36 100.0 35 .................................... TAGGGGTACGGCGAAGTGAGTTGGAGCGCTTACCT 1014 36 100.0 35 .................................... CTGTGTTTGGGGTGATGGTCGAGCGCATACAGGAC 1085 36 100.0 37 .................................... CGGAAGTATGGTACCATTCGCAGAACCGTCGCGACCA 1158 36 100.0 38 .................................... TAGACCACGGTACGTACCTGCTTGCTGAACACCGGCGT 1232 36 100.0 36 .................................... GACGGCCTGTATATGCAGGTCGAGCATGTGCAATAG 1304 36 100.0 39 .................................... ATCACCGCCGACGTGATAGTCCAGCCGAGCGATTGCGCG 1379 36 100.0 38 .................................... TATGGCGGTTCGAACAAAGGCTTGGCGTATCCGCTGTC 1453 36 100.0 35 .................................... CCTGCGGTGAAGCGGCCGATGCTGGTGCGGCTCGC 1524 36 100.0 40 .................................... GTGTGTCTGCAACTACACGTCGGCGTGGGTGTCGGAAAAC 1600 36 100.0 35 .................................... CATGGCGAGGATGCCGATCTCGCGCCGAAGGGCCT 1671 36 100.0 34 .................................... CGTGGTCTTCCGCAAATCCGCTCCAGCCGAGCGT 1741 36 100.0 36 .................................... TTCTTCATATCGGTCCACGAGTGCGCCATGTTTTCC 1813 36 100.0 36 .................................... TTTCCAACCGCGCACGAATTGGTACACGTTTACGTC 1885 36 100.0 38 .................................... GATACCGAGTCCTCGAGCATGATTTGCCGCAATTCGAT 1959 36 100.0 37 .................................... AGCACCCGGTACGAAATGGTCACGCATCGCGCCTCAT 2032 36 100.0 36 .................................... CGGAAGAATACGACACCCTTTTCAGCGGCATGACCC 2104 36 100.0 37 .................................... TGGCGGTGCCGGTGGTGCCGTCGAGCTTGCGGAAACT 2177 36 100.0 36 .................................... GAGTCCCCGTTATGACATCGGCACGGTTTTCGACGT 2249 36 100.0 38 .................................... CCGCGTACGTCCTGCCGTAGGTTCGATTCCATCACCTC 2323 36 100.0 36 .................................... GCCGTGCACGAAAACAGTCTGCCGATCGACCTGCGT 2395 36 100.0 38 .................................... TGCGTACAGCCGTCGCCAATGAGGGCGGCCTAAATCAG 2469 36 100.0 37 .................................... ACGGTCAGCGAGCTCGCCGAACGATTGAGATCCGGCA 2542 36 100.0 35 .................................... AACGCATTCAAAATCTATCCTAATGCGCGATATTG 2613 36 100.0 36 .................................... CTCCGCCCGCTCCCGACGAAACTCCTCCTCATCCTG 2685 36 100.0 36 .................................... GGTCTGTGAGTAGCCCATGTTCGCGGTCTGACACCA 2757 36 100.0 35 .................................... CGGCCCGCGTATTTCTTGAATTCCGCGTCGTCCGC 2828 36 100.0 37 .................................... TCGCACTCTCGCAAGCAGGCGGACTCAAATCAATCGC 2901 36 100.0 36 .................................... AGGAGGAATAGATGGGCAAGATAACAGCTAAGAGAC 2973 36 100.0 37 .................................... ATGCCGGACACCGCGCTCTCGTAGTGACTCACATTCT 3046 36 100.0 36 .................................... CGTCGAACTACGCAAATACAATTCGTGGACCTTCCA 3118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 42 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : CCACTCCCTGATGAGATAACCGAAAACGAGAGGAACCATCCGGATTACCGGTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACAGCCATGATTTACCGCCA # Right flank : TAGTCTTAGTGTAGAGCGTTGTGGTGACATGTATCTCAAGCAATTATGCGAGCGATGTACTTCATACCCTATGAAAAATGCGAATCTGGGAACGCTGAATCCCACAGAAACGCCATTTTCCGCATGCGAGCGCTTGCCGCGCGTCTCAGAAGTGATTCACCTCTCGTGCGCATGCAAGACGAAACACTCTTTAGTTATCAAACAGCCCAGCCGTTTTGACTGAAATCAAATAATTGTGGGAATTTCTAAGTCTGCATATCCTCGATGCCCCAGAAAATCCAATCCCTCTTCCGTCTGCGCAATTGTCCCCAATGAGCAGAACACAACAGAATCGGTTCCATAGTCAATCTCTTTCTCAATCTTCATACGTACGTTGAGCATCATTGAGGGGCGCACTTGCAACAGAAAAACACTGTATTGCAGCCGTTCTCCATAATGCTGAAGAATCTTCGCTACATGACTGCGACGGTAATCATCGCTCACATCATATGCAACTAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 21-186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWN010000030.1 Bifidobacterium dentium strain UT_Austin_Bifido_FMT_C3 contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================ ================== 21 37 100.0 27 ..................................... GCTGTGACAGTGTTGTGACAGTGTTGT 85 37 100.0 28 ..................................... TGACGTGCATGTGGTGGTTTCCGACTTG 150 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================ ================== 3 37 100.0 28 GCAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : CCTCTCTGGTGGTCAGAATTG # Right flank : TATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATCGTGAAGTCGCCATGTTTATTGCCGGCCGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //