Array 1 206055-204578 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIDW01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 3171 3171_4_length_417959_cov_76.284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 206054 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 205993 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 205931 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 205870 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 205809 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 205748 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 205687 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 205626 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 205565 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 205504 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 205443 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 205382 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 205321 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 205259 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 205156 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 205095 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 205034 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 204973 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 204912 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 204851 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 204790 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 204729 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 204668 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 204607 29 96.6 0 A............................ | A [204580] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223802-222187 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIDW01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 3171 3171_4_length_417959_cov_76.284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223801 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 223740 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 223679 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 223618 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 223557 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 223496 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 223435 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 223374 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 223313 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 223252 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 223191 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 223130 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 223069 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 223008 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 222947 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 222886 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 222825 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 222764 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 222702 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 222641 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 222580 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 222519 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 222458 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 222397 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 222336 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 222275 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 222214 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //