Array 1 1148242-1146789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMU010000003.1 Listeria monocytogenes strain 2014L-6130 NODE_1_length_1465143_cov_51.5536_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1148241 29 100.0 36 ............................. ATTTTCACCTGTTTTGGAATTGCCATGCGTATCCCC 1148176 29 100.0 36 ............................. ACCTTTAAGAAATGTCAATTTAAATATTTCTCGTCT 1148111 29 100.0 37 ............................. AGGACATCATCAACACCATTTGAGGTAGCGGTATTAA 1148045 29 100.0 34 ............................. TAATTCTTCTGCCGCTTTTCTGTCAAGGTTCATT 1147982 29 100.0 35 ............................. TAAGTTTCAGCTCTTCAATATAGTCCGCCATTTTC 1147918 29 100.0 35 ............................. ATATCATAATTACCAGATCGCACAAACACCGCTGA 1147854 29 100.0 34 ............................. AAAGTAGCCAAGCGCTCTTCAATGTCTCGACTCA 1147791 29 100.0 35 ............................. TTTGTATCCATTAACCCTGTTTGAGCGTCTGTCAT 1147727 29 100.0 34 ............................. GCTTCTTTATATGAAACGCGATATTTCCAACCTG 1147664 29 100.0 36 ............................. CTAATCCCATGATATCTGCTTCGGTCATGTTGACTT 1147599 29 100.0 36 ............................. ACCTGAAAGACTCATGTTCTGGCCATCCTGTTCCTC 1147534 29 100.0 35 ............................. TCTAGTTGAAATATTGCTACCTAAAGGGACGCGAG 1147470 29 100.0 36 ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 1147405 29 100.0 35 ............................. GCAGCCAAAAACGCGGGCAAGGGCGTAGCTAATAG 1147341 29 100.0 37 ............................. ATCTACAGAACTCTCCGACTCTTGCACTTCCGTGATA 1147275 29 100.0 37 ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 1147209 29 100.0 36 ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 1147144 29 100.0 37 ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 1147078 29 100.0 36 ............................. GGTTTTAACTTCTAGGTTATTTTGTGCATTTTTTGG 1147013 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 1146947 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 1146883 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 1146818 29 93.1 0 .......................C....C | A [1146793] ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : GCATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGTAGAATATCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1164313-1163831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMU010000003.1 Listeria monocytogenes strain 2014L-6130 NODE_1_length_1465143_cov_51.5536_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1164312 29 100.0 34 ............................. TTATACAGTGCGTTTGTTGTATTCTCTTCCCTAA 1164249 29 100.0 36 ............................. CGCTTCGGCTCCCCGTTCAGATTTACGTCTGGATAC 1164184 29 100.0 36 ............................. CATAATGGACTGGCGCCATTTTACCTTCGGATGCGA 1164119 29 100.0 34 ............................. ACATAATTTAAAGAACTCTTAAAACTCATTTTAG 1164056 29 100.0 37 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTGTCCT 1163990 29 100.0 36 ............................. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 1163925 29 96.6 37 A............................ GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT 1163859 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 97.0 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGAGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGCGAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATAGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTTAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //