Array 1 3232-4729 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJX01000020.1 Prevotella shahii DSM 15611 = JCM 12083 strain DSM 15611 EJ73DRAFT_scaffold00020.20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3232 37 86.5 33 ..A...T.AA.......C................... AATAGTAGTATTACTATATGTAGTATGAAAATA A [3234] 3303 37 100.0 37 ..................................... CCTCAAACAATGGCCAGATCGACACTGGATTTCTTAT 3377 37 100.0 34 ..................................... TTTTTACCTGCATAGTATTGCAGCACCCATCCGT 3448 37 100.0 36 ..................................... AAGTTCGTAGTTATCTTGATGATGAAGCTGCTGATA 3521 37 100.0 36 ..................................... TGTTGCAAGTGGTCAGGAATATCACAATCCTTGGTC 3594 37 100.0 37 ..................................... AGCTTTGCTGAAGGTGAGAGAAATATAGTTTTTATTT 3668 37 100.0 35 ..................................... GAAATTGTATCAAAGATAGAGACAATCTTACTTGA 3740 37 100.0 37 ..................................... GTAAGGCTTGCGGAGGGTTGGGTTGCTGGCTTGTCCT 3814 37 100.0 36 ..................................... TCGATACCAACACCAGTGTAAGATTTGGATTTGATA 3887 37 100.0 36 ..................................... CTACAAAAAAAGAGATTTTACATACTTTTAAACATG 3960 37 100.0 35 ..................................... ATTAAACGGTATCGCAAAAGGTAGGTTGACACCTT 4032 37 100.0 40 ..................................... GGTGACGACAAAAAGAGCATCATTGCTGAAATTAAAAAAT 4109 37 100.0 35 ..................................... ATGCAGTTGAAAACCTACTGGACTCCACAAATCTC 4181 37 100.0 34 ..................................... GCTCATAATAGCACTTATTACGATGCTATTATTA 4252 37 100.0 37 ..................................... AGCCTTTGGCTCTGCAAATAGTTACACACTATCGTTT 4326 37 100.0 38 ..................................... TCAGGCACAAGTATTGTAACATGCGTATTCAGTCCTAC 4401 37 100.0 38 ..................................... ATGGAAAAGAAACAAGTAATTGAACAACTCATCAAGAA 4476 37 100.0 36 ..................................... AAATTCTGTTTGTAACGAGAATTTACAACAAGAGAA 4549 37 100.0 34 ..................................... TTTCCTACACTTTGTGTTGGCATAGCTACTATTG 4620 37 100.0 36 ..................................... TGCTCTTTTCTTTTCATCAAAAGCAGAACTTGTTTC 4693 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 99.4 36 GTCTTAATCCTTGTTTTAATGGAAGATGCACTAGTAC # Left flank : ATCGTCTGCCCCATCTCCACCGACCAGTTGCGTTCTATGCGCATCATTGGCCAGCAAATAGACGTCGACATCATCACCCATAGTCGCAACACCCTGTTCTTTTAGCCTATTTGTGCTTAAAAACAACAGCAGTTCCTTATACCATTCTAGCAGAAACCCTTGTATCTACTCGAATGGTATAAGGACATTTTCATTATTTCCCCTCCTCTTTTTCTTCTTCACATACAAAGTCAGCGCCCACCAAGCGCCTTTTGCTTGCTCGTTGCACCGCTTATTTCACCTGCGCAACGCACAGCAATAAGCCTATTGCAGTGTTTTTAAAGCCTACATTATCAAAGCAAATGCACTAGCACCTAGTAAGGATAAGCCCCACAGGCATTCGATAGTTTCCATATCATAAATAGGAGAGTACCCAACACAATAGGGTAAATTACCAAACAAAAGATAACATAACCTTTCTTAAACTTATTCCAAAAACTCTTTCATGGTCATATTGTTTT # Right flank : CAGCAAAACTACGGTAATGCTTTGTTTAAGTGCATTGTAAGACTAAATTGTGCATCGTAAGACTTGATTTTAACAAATTTTATGTACCTTTTTAGCGAATGCAAAGGTATAACTTTTTACAGAAATGCACAAAATTATTATGTTAAAATATCGAGAAAACGTGTTAAATATCAATGGAGTAAGAGTTGCCTTAAGCTGCTGTTCACAGACACTTCTCTGCGTTTTTGCAGCAATAAAACTGTCACTCAACAACAAAACGGGGTGTATAAGCTATTGAGCAACTTAAATCATAGACACACTGTGGCACAAAAACAACGCCTCTAATATTGTAAAATATTTACACCAAACTTTAACATTTTGAGTGCCTCCGCTGTGAAAATTCCTGGCATGGGGCGTATTTTCGTGCGTATTTCTGAAGTTTATAACACACTGGTTTACTGATAATTACCAATAAAAACGCAAAATTATACCATTTCTTGGCGTTGAATAGAGGATTGCTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATGCACTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 13536-12695 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJX01000054.1 Prevotella shahii DSM 15611 = JCM 12083 strain DSM 15611 EJ73DRAFT_scaffold00054.54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 13535 37 100.0 37 ..................................... TTAGTATCAGAACTACTAAAAGGATTAGTATATTCCT 13461 37 100.0 36 ..................................... TCCAACTCAATTTCCTATTATTTATTCTCTACAAAA 13388 37 100.0 36 ..................................... CATAACCGCAAGGTGGTACATTTTAATTGTACGGGT 13315 37 100.0 35 ..................................... CCTGACACATAATTCAAAATAAAGTACTTATTATA 13243 37 100.0 39 ..................................... TCATCATCACGCAACTGCGCAACGATGCTGAAAAGCGAC 13167 37 100.0 37 ..................................... TACGTGGGCAGCAATACGTCCGTTAGGAAATATCGCT 13093 37 97.3 37 ........................T............ AGTTCACTAGGATTTCTTTAACCTCTTTTACAAACTC 13019 37 100.0 36 ..................................... AGAGAAATAAATATAACTTTGCTTTCACCCTCTTTG 12946 37 100.0 34 ..................................... AATTTTAGATACTCCTAAAGAATTCAAGATCTTC 12875 37 100.0 35 ..................................... TCACCAGTGTTAGTGGCTGCGGATTGGTCACCAGT 12803 37 89.2 34 ..G.........A.......G..............G. ACGGCTTATTTTCTCCATAAACAGCCTTACATCC 12732 37 73.0 0 ..G.G......C....T....C.......CA..G.TT | A [12703] ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 96.6 36 GTACTAGTGCATCTTCCATTAAAACAAGGATTAAGAC # Left flank : GCATCCAGTTTAGTGCAGCGTTGCAAACTTACACATTTTTCTTATCATTTAAAAATTTTATCCATGTTTTTTTTACTGGCATTTGCTTATTATGCATGTTTATTTAGGCGTTAGCTGTTAGGTTGTTGTGGGTTATGTAGTGTTCCTGTTGTGTAGTCTTGTAGTTAAGATTTTAGTGTGAGGTGATAGGTTTTCGGGTGTTTAAATGCGTGTTATTTTGCGTTACAGATGGTTATTTATATGGTGCGCGCCATTACATTTATACAATTGCGCGAGGCTTAGTCACGATATGCGGTGTTATTGGTGTTACTTGTTTTACGATTATTATAAGTTGAGTCTGTGTTTTCTTATATTTTTAACAATAATGGTTTGTTGTTTTTGTATATTCTTAGTAATTTTGCACTCGCTAAAAAGGTACATAAAATTTGTTAAAACCAAGCCTTTCGATGCACAATTTAGTCTTACAATGCGCTTAAACTAAGCATTACCGTAGTTTTGCT # Right flank : TGTAGCGTCAATAACTCAACCCTTTTGTGCTTTAGAGTGTACCAGCATTGTTCTTTCTTTTAATTTAAGAATAGCTAAAGAGCAGACTTTAGCTGTTTTTATTTCTGTCAATACTGCAATTATAATTTGTTAGGGTGGTAAACATATTTTACAAATTGTGTTTTCGTGCTTGCCACTTTTAGACAAACAATCCTCTCAAAACGTATGTAAAATGTGGCTAATAGGCGAAAGGGGCGGTGGGTTTTGCGCACTTGTTCTCCCCGTTTTTTGCAATTTACTATGCTTTTGCCTTTCTTTTTGAAGAAAAACTGTCCCAATTTTGGGCTCGAAACGTTATGAATATTCGGTTTAAAGCTTTGCAGATGTACTGCATTTAGCATCAAAACGCATTGCAATATGCAGCAAAACGCAATGCTAACTCCTGCAAAACGCAATGCTAACTCCTACTAAACGCAATGCTAAGTGGTGCTAAACGCGGGGTGAAATGTAGCAAAACGCAT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAGTGCATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //