Array 1 290890-291369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMR010000001.1 Listeria monocytogenes strain 2013L-5616 NODE_1_length_1530941_cov_50.4082_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 290890 29 100.0 35 ............................. TTTGAACCATCTATTTTTAAATTTGAAGTGACAGG 290954 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 291020 29 100.0 35 ............................. TCAGGAATCCCTGAGTGAGTTGAACAAAATAGAAA 291084 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 291148 29 100.0 35 ............................. TTGATTTTATTAATGTTCTTATCAATAGAGTCATT 291212 29 96.6 36 ............A................ TCGACATAACACATATATTTAAAATCATTAAAACTA 291277 29 100.0 34 ............................. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAG 291341 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.6 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 306975-308887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMR010000001.1 Listeria monocytogenes strain 2013L-5616 NODE_1_length_1530941_cov_50.4082_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 306975 29 100.0 36 ............................. AACAGACATGATGGGGAAATCGTTGACAGCGCGCCA 307040 29 100.0 37 ............................. TTAATTTGCGTTTTAAATAACTTGAATGAAACATATT 307106 29 100.0 36 ............................. AAAAACTAAACTCTTCTTTCTTTCCGTTATTGTCTA 307171 29 100.0 36 ............................. ATGATTTATGGATCGTTTATTAAAATGTTAGAAGGT 307236 29 100.0 36 ............................. ATTCCCTCGTGCTCGACATTGATATACTTTTCCTTC 307301 29 100.0 38 ............................. AAATTATGTTATGGATAAGTACGGGTGGGAGCATGAAT 307368 29 100.0 36 ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 307433 29 100.0 37 ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 307499 29 100.0 35 ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 307563 29 100.0 34 ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 307626 29 100.0 36 ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 307691 29 100.0 36 ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 307756 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTAAT 307822 29 100.0 36 ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 307887 29 100.0 36 ............................. CTAATCCCATGATATCTGCTTCGGTCATGTTGACTT 307952 29 100.0 36 ............................. ACCTGAAAGACTCATGTTCTGGCCATCCTGTCCCTC 308017 29 100.0 35 ............................. TCTAGTTGAAATATTGCTACCTAAAGGGACGCGAG 308081 29 100.0 36 ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 308146 29 100.0 35 ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 308210 29 100.0 36 ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 308275 29 100.0 34 ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 308338 29 100.0 35 ............................. AAAGTTTCATCTTCGCCGTCTAAATCGTTCCAAAA 308402 29 100.0 37 ............................. ATAAAATTACACATTGGACTCCAAATATTTTCAGATG 308468 29 100.0 36 ............................. ATTTGTTGGGAAAGAATCAACTTCAAGTTTAGATTT 308533 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 308599 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 308664 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 308729 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 308793 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 308858 29 93.1 0 .......................A....C | C [308881] ========== ====== ====== ====== ============================= ====================================== ================== 30 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTTGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //