Array 1 228390-224353 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDQ01000001.1 Serratia marcescens strain 1510 NODE_1_length_356467_cov_5.39658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228389 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 228329 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 228269 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 228209 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 228149 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 228089 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 228029 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 227969 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 227909 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 227849 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 227789 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 227729 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 227669 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 227609 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 227549 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 227489 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 227429 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 227369 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 227309 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 227249 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 227189 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 227129 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 227069 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 227009 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 226948 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 226888 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 226828 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 226768 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 226708 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 226648 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 226587 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 226527 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 226467 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [226421] 226420 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [226411] 226359 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 226299 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 226239 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 226179 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 226119 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 226059 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 225999 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 225939 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 225879 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 225819 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 225759 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 225699 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 225639 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 225579 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 225519 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 225459 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 225399 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 225339 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 225279 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 225219 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 225159 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 225099 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 225039 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 224979 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 224919 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 224859 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 224799 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 224739 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 224679 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 224619 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 224559 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 224499 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 224439 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 224379 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGGGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 239613-237239 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDQ01000001.1 Serratia marcescens strain 1510 NODE_1_length_356467_cov_5.39658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239612 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 239552 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 239492 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 239432 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 239372 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 239312 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 239252 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 239192 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 239132 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 239072 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 239012 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 238951 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 238891 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 238831 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 238771 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 238711 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 238651 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 238591 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 238531 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 238471 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 238411 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 238350 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 238290 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 238230 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 238170 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 238110 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 238050 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 237990 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 237930 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 237870 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 237810 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 237750 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 237689 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 237629 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 237569 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 237509 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 237449 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 237389 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 237329 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 237269 28 96.4 0 ....................A....... | G,A,A [237242,237246,237248] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //