Array 1 162892-160422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNH01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162891 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162830 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162769 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162708 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162647 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162586 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162525 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162464 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162403 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162342 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162281 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162220 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162159 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162098 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162037 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161976 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161915 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161854 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161793 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161732 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161671 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161610 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161549 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161488 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161427 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161366 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161305 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161244 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161183 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161122 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161061 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161000 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 160939 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 160878 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160817 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160756 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160695 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160634 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160573 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160512 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160451 29 93.1 0 A...........T................ | A [160424] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181503-179399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNH01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181502 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181441 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181380 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181319 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181258 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181197 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181136 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181075 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181014 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180953 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180892 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180831 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180770 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180709 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180648 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180587 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180526 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180465 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180404 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180343 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180282 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180221 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180159 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180098 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180037 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179976 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179915 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179853 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179792 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179731 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179670 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179609 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179548 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179487 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179426 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //