Array 1 817-2844 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAI01000025.1 Neisseria meningitidis strain Nm94 Nm94_scaffold_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 817 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 883 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 949 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1015 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1081 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1147 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1213 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1291 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1357 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1423 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1489 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1555 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1621 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1687 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1753 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1819 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1885 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1951 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 2017 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2083 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2149 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2215 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2281 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2347 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 2413 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 2479 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2545 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2611 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 2677 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 2743 36 100.0 30 .................................... CGCGCGCTTGCGCAAGGGCGCATCGTTACC 2809 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //