Array 1 4895-5288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJQ010000202.1 Photorhabdus bodei strain DE6.1 Plum_DE6.1_202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================================== ================== 4895 28 96.4 32 .....T...................... TGTATTTTTAATTCACCCGTACGTGACAGTGT 4955 28 100.0 32 ............................ CGAAAGCTGCCATTAAGCAGCTGGCTGATATG 5015 28 100.0 32 ............................ ATCACTTAAAATATCCGCGTCAAATTTAATGC 5075 28 92.9 159 .........................T.C TACAGCCGTAGATACCAGAAAGTTGCATTTTCCTTGATGCTCACAACTCTGAGAAACCGCATGAATTAAGCTTTTCTATGGGTGTCTTTTCTGTTGAAAAAAGTAAGTACGGCTGTAGTATTAGAAAGAGACCACTCTGAACGATGCGAAAGCACGCTT 5262 27 85.7 0 ...........T.........-C....T | ========== ====== ====== ====== ============================ =============================================================================================================================================================== ================== 5 28 95.0 64 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TAAAAGAGTTTTGCTTTAATAGCAGAACTCTTTTTTTCCTTAAGGTTTTGTATTAATAATATTAGTGACGTGTTTATCTTAAGAAATATTTAGAGAATTGAGGACGATATGCCCATAGGAAAATAGTGTAGCTTTGCCTGATAAATACACTCGATCTCCATGCAATTCACACATAATATTTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCACTCCAAAATGGAGCCAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACACCCTTAGCGGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCTGGTGCTGTTATGACAACTCCCGGTAAAGGTAAAGCCGCTAGTTTGTCAAAATTGGGTTTTGTATTTAGGACCTGCTCTGCGGTTTCTAGTAAACAAATATAGCGATTATGAGAGACAAAAAGCTCGGATATTTTCTGACTTAATGCATTTTCAATCT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6134-5986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJQ010000006.1 Photorhabdus bodei strain DE6.1 Plum_DE6.1_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6133 28 100.0 32 ............................ GTTCAACTCGTCAGGGATTTCCAATTCACGAT 6073 28 100.0 32 ............................ TCCATTTTTACTTTCATTAAGCTTAGTTCATA 6013 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGGTGCGATAACAAATGGTTACCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTTTGGCGTGGCTACAGATGGTAATCCCAAATCGGTAGGTCATTTTACCCCGGATACTGTATACACTGCATACGGTTTTGGGTTCGATACGTCAAGGGTTGTTCCTGTCGCTTCGGAGAACCGCCCCCGCAACGTAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCAGAATATAGAAGTACTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGTAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGAACCTAAATTTTACCCTTTTTTAACGACCAACTATAATTCATTGATTTTTAATGAAATTTAACCTGTCTCATAAAAAAGGGTTTTTTTGCTTTTGATAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : TAGAAAGTCTAATGGAGATGAAGCCTTTGTTGATGTTCCGGCAAGTGTTGCAGTTAATGTATTGTTGTTAAATACAATGCTGCAAACAAAAACAAATAATGCAGAGCTAGCGAGAAAAATAGGAACGTTTCCGCAAGATGTTCAACGTATAGTCTCATTGCGTCACAACACGAAGATTGACACGGTAGAAAGCGCGTTAAATGTTCTTGGTAAAAGATTGAATCTCGCTATTAGTTAACAACTTATTACACACGTTCAAAGGCTGCGCATTGCGTGGCCTTTTTTATTGATAGATAAAATTTTCTTTTCCATCGGTTCTACGAATAGAGAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGCATGTTTTCAATTCTAAAATATTTAATTACTTATTGCCGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACCGGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 39002-38794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJQ010000006.1 Photorhabdus bodei strain DE6.1 Plum_DE6.1_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39001 28 100.0 32 ............................ TAGCTCGCGCAAATTGGTATTGCTTCGGGTAA 38941 28 100.0 32 ............................ ATAGTATGACGACTTGGCATCAGTTCCAGAAA 38881 28 100.0 32 ............................ AGTACAGTGATGTGAATGTTGTCGCTATCCAC 38821 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGGTGCGATAACAAATGGTTACCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTTTGGCGTGGCTACAGATGGTAATCCCAAATCGGTAGGTCATTTTACCCCGGATACTGTATACACTGCATACGGTTTTGGGTTCGATACGTCAAGGGTTGTTCCTGTCGCTTCGGAGAACCGCCCCCGCAACGTAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCAGAATATAGAAGTACTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGTAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGAACCTAAATTTTACCCTTTTTTAACGACCAACTATAATTCATTGATTTTTAATGAAATTTAACCTGTCTCATAAAAAAGGGTTTTTTTGCTTTTGATAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : TGAAGATAGTGGTGCCAGGCGGGAGTGGACGACCCGCATTTGGGAAGGTCATCCCCCCTCATTTCATGAACAAAGGTCTTTATCTGAACGGCTATACAGAGAGCATCAAGTAAACACGCAGCGACTACGCGGACATAAGTCATTTTGATTATCAGCATTCAGCAGTGTTTTATAACACCTGTCGTTGACTTAAATGGCCCGGCGTCTCCGGGACATGAATGTGAAGACGGAATACCCGAAAATAAATCATCGTATCCATCATCAATCATCGTATTTTCCCCGGACTTCGGCTCCCTATTTCAGGAACACCCCCTTCAATAACTTTCATGCCATTAAAAATAGTCCAAAAAAATATCCCGGACTATCGCATAGAATAGGACTTCCTCATTTCCAGCCGCATTATCCTATAAAAGCTATAATGAATAAGCGAGTTATTTCATAATATCATCAATATGACGCCACTTAATTAAATTTATTCTCATTCGCATAATCTGACTGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16946-17653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJQ010000064.1 Photorhabdus bodei strain DE6.1 Plum_DE6.1_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 16946 29 72.4 31 .......TCACC.C.GT............ AATTTTGGTATACATTTGCACAGGGAAAAAT C [16972] 17007 29 82.8 32 A....T.....G....AT........... CTATAATTAGTGGTAGGATATCGTGTTAGTGA 17068 29 75.9 33 .......TG..CA....C...G......A AACTCGATAAATCTCGTCAAAGAGAGAATTTAA 17130 29 100.0 32 ............................. CGGCATGAGTGATGCTTTACTATGTTCACTAA 17191 29 82.8 33 A...........A..........GG...T AGCAGTGCTCCAAATAGTTATATAGCTAAGGAT 17253 29 93.1 93 .A............G.............. TACGAGAATGACACTGATCATTGGCTTCCTTGGTGTTCCCTACCTCTCTGGGGATAAACCGGACAGTAACAGTGACATAGTCGGTAGTCATTG TACTC [17268] 17380 29 79.3 32 .......T...G.CC......G.G..... AACTGATACTGTTGTGCTTTGGATTTGGAAGC 17441 29 93.1 32 ............C.A.............. AACAGTTAGCGTTTGAGCTGGCAGAGATGGAC 17502 28 79.3 32 T.......C..TC.-......G....... CTAAATACAGAACTATCTCCATCTGTTGCAAT T [17511] 17563 29 86.2 32 T..A.........C.........C..... TCATCCGGAAAGGTCATTGACATAAAGGGTCA A [17573] 17625 29 79.3 0 .A.....T..A...G.T...........A | ========== ====== ====== ====== ============================= ============================================================================================= ================== 11 29 84.0 38 GTGTTCCCTGTATTTACGGGGATAAACCG # Left flank : CAGGGGAAAATAAGAGTGATGATGGAGAATGCTGCCCGTAATTGGCTGTTAAATCATCGTCGTATGCAGCAGTGGGGTATTCAGTTTGACGATTTACTGGATATTGAAGGTTATACTCAGCATCGAAGTGTAAAAAAGCAGGGGCAAAAAATACAATTTTCCAGTGTTGATTTTCAAGGGCTTCTGACGATTACCAACGGTGAGCTATATTTGGAACAGTATGCAAAAGGCTTTGGTCGCGCTAAAGCGATGGGATGTGGATTGATGTTAATTAGAACAGTATAATGGCATTGATGTCATTTAAATTTATTTTTGTTGAAGATCGTAATGCAGTATTCTTTGTTGTATGAAGATATTGATGTTAAAGGTAGCAAATTCGCTGTTGTTAGGCGTTCGTGTTATGTTTCAAAAGCACGGTAAAAAGTGATATTGCTAACTAATATCATCCTGTAGAGTAAGGCGTGGTCGTTACTCTCGGAAATATTGATAAAATAATTACC # Right flank : AGATTCAGGTTTCATGATGATAGTTGAAGTAGAAATGTTCCCCGTTTTTACGGGGAAAGAGCAATTCGCTGCCACCTTGACCACAATTTTCAGGCCGATGATAAATCTGCGGTTCGGGCATATCGATACCGGGCAGTATTCGCTCGGTGATTTGACAGCGCTTTTTTCGGTATTAAGGTCAACGGCTTATCGAATTTTTGTACGTAAGAGAATGACTCAGGATAACTAACGGAAATTTGTAATGAAGAAAAAGCGACTAAGAAAATTTCAGAAAGAACTTGAGACGTTGGGGTTAATTGAAAATGATCCAGATGTGGTCGGTTATGTGCTGTTTAACACGCGTAATCGCCGATTTGTGATACTGGATGAATATGAATTGGGGAGGGTGACTTACACCGATGATATTGAAGAAGCTTATTTAGCAATGTCACGATTTGCCGCATTAATGGATATTGATTCTTTGCCGGAGCCAGACAAATTCGATATTGCTGTTATCCCTG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:-1.5, 6:0.25, 7:-0.74, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATTTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17172-16242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJQ010000099.1 Photorhabdus bodei strain DE6.1 Plum_DE6.1_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17171 28 96.4 32 ....C....................... AGAGGAATTAGAGGATTAATGGCGTGAAGTTA G [17168] 17110 28 100.0 32 ............................ GAGCATCACATATTCGATATCTGAAGCGATGA 17050 28 100.0 32 ............................ TATTATTGACGTTCGCTTTCAATCCAAAATTC 16990 28 100.0 32 ............................ AATAGATTATGAACTAAAAGAGGGTCAAATAT 16930 28 100.0 32 ............................ GTCACAACATTCTACCAAGACCGTCCGGTGTT 16870 28 100.0 32 ............................ TCATTTAGGGTTTTAAATGCCTTTGTAGCCCC 16810 28 100.0 32 ............................ ATCTTCCCGGTCTATTCCCAACTGCACATAAC 16750 28 100.0 32 ............................ ACTGCCAACTTTCCAACCATTGCGGACGATAA 16690 28 100.0 32 ............................ TTTGTGGAGAATACCAAGGCTGATTACCCGGA 16630 28 100.0 32 ............................ TTTGTGGAGAATACCAAGGCTGATTACCCGGA 16570 28 100.0 32 ............................ TGAGTCGTCCACTCCTCCATGAGAAATTCACC 16510 28 100.0 32 ............................ TCCCTGCGGGATGCGGGAAAATTAATTACCTC 16450 28 100.0 33 ............................ AGGAATTGAGTTCATTGATGACAGAAATGGTAA 16389 28 100.0 32 ............................ AGCCTGATGCGGCTCTGGCCGCGAAACCGATC 16329 28 100.0 32 ............................ AGATTCAGTCAGCAGGATATGCAAGCCCCATT 16269 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATTAAAGCGAAGCGTAGACGAATATGGATGAAAACCCAATTTTTGGAGCGAGTATTACAGGCGGGTTTTGCTAATGTGAGTGATATTTAATCATTCATGC # Right flank : TCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTTCTCGATATGCATCAATTGTTATGCTTTTGTGCATATTCTCCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAAGGGTTGCCACTGGGTGGTAGCCTTTGGGGACCATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACCCGTTGCATGCAGAATCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCGTCGGTAAAGACTTCAACCACCAACAAGCTTTCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //