Array 1 62247-60525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQWD01000061.1 Salmonella enterica subsp. enterica serovar Bardo strain CRJJGF_00099 SQ0147Contig72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62246 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 62185 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 62124 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 62063 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 62002 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 61941 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 61880 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 61819 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 61758 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 61697 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 61636 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 61575 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 61514 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 61453 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 61392 29 100.0 24 ............................. NNNNNNNNNNNNNNNNNNNNTAAA Deletion [61340] 61339 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 61278 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 61217 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 61156 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 61095 29 100.0 24 ............................. CAGACNNNNNNNNNNNNNNNNNNN Deletion [61043] 61042 29 96.6 32 N............................ CAGACGGCAGCAGCGTGAAACACGTCAGTATT 60981 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 60920 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 60859 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 60798 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 60737 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 60676 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 60615 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 60554 29 100.0 0 ............................. | A [60527] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCTTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8011-6825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQWD01000043.1 Salmonella enterica subsp. enterica serovar Bardo strain CRJJGF_00099 SQ0147Contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8010 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 7949 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7888 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 7827 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 7766 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 7705 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 7644 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 7583 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 7522 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 7461 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 7400 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 7339 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 7278 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 7217 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 7156 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 7095 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 7034 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6973 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6912 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6852 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //