Array 1 1863585-1860929 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014597.1 Prevotella intermedia strain OMA14 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1863584 47 100.0 30 ............................................... ACCTCGTAATTGTTCAAGACGAGCTGCTCG 1863507 47 100.0 30 ............................................... GTAGCCTCTGTAACGCTTATTTCCATAGCT 1863430 47 100.0 30 ............................................... CAGTAAACAGAGCTACATTGTTAGGACACA 1863353 47 100.0 30 ............................................... ACTCTTTTTGAGCATACGTTACGTTACTTG 1863276 47 100.0 30 ............................................... GGGGTCGTTTATAACAACGCCATTGTCGGC 1863199 47 100.0 30 ............................................... TCCTCCCTCTTCGTTCTCGCTGCCTTGCTC 1863122 47 100.0 30 ............................................... CCCCTCCGTTGTTGTTATTTATTTACTTCG 1863045 47 100.0 30 ............................................... ACCCTTTGCCCGTTTTGTTACTTACTGCAA 1862968 47 100.0 30 ............................................... TGTGTCTGATATGTTCGATGACAGTTACGA 1862891 47 100.0 30 ............................................... TAAAGACGGTGTGCCAACAACGACTTTAAA 1862814 47 100.0 30 ............................................... TCTGGTAACAATTCGTTTAACTTTACTGCA 1862737 47 100.0 30 ............................................... CTTAATGGAGATATGTCGCTTCGTTCTCGT 1862660 47 100.0 30 ............................................... CTCGTTGGTTTTACAGCTATTTATCCTAAC 1862583 47 100.0 29 ............................................... TACTCTACGTGGATGTGGTCTTGTTCCAA 1862507 47 100.0 30 ............................................... TTTAAGCTTATTAGTTAGTGGTGCTGTTGG 1862430 47 100.0 30 ............................................... GCTATTGATATTCGCATAAATGATAAATCT 1862353 47 100.0 30 ............................................... TTACCCCGTTATTCGATGTACAAGCATAAG 1862276 47 100.0 29 ............................................... TCATTGGTTCAATTTCAGACACTTAGACG 1862200 47 100.0 30 ............................................... GCCGTTGATATTCGCATAAATGATAAATCT 1862123 47 100.0 29 ............................................... CTTAACGGTGATATGTCTTTGCGCTCTCG 1862047 47 100.0 30 ............................................... TATAATATTTACCACCTTGTTGGCTTGCTT 1861970 47 100.0 30 ............................................... ACCCAGCTCGTTGTCGCCAGTTATGAAATA 1861893 47 100.0 29 ............................................... ATCCTTTGGACGATAAATACAAATACCAC 1861817 47 100.0 30 ............................................... AGGCTTGGACGTCCATTACGAGGTAGTAGA 1861740 47 100.0 29 ............................................... ATTTCGCTTCTACGTACTCACTTATCGTT 1861664 47 100.0 30 ............................................... CGTCCTTATCGCTCTTGTACTCCGTTTCCG 1861587 47 100.0 30 ............................................... TCCCTTGTTCAATTTCAGACACTTAGACGT 1861510 47 100.0 30 ............................................... TATTGGCTCTTTGAATGATGGTGAATTATT 1861433 47 100.0 29 ............................................... TTAGCGAATATGGAACTTGCCTAATTATG 1861357 47 100.0 29 ............................................... TATCAACTTTCACGGAATTCTACCGACAC 1861281 47 100.0 29 ............................................... GTTATCATATTACTGTTTTATTGTATCTG 1861205 47 100.0 29 ............................................... TTGCAACAGCAGCCAATCTTTATATGATA 1861129 47 100.0 30 ............................................... GGTATAAATGCAAGTGCTACTAACCTGTGA 1861052 47 95.7 30 .........A.T................................... CCACCGCCGCTTTCCTCAGATACGCATAGT 1860975 47 93.6 0 .........A.T..............................C.... | ========== ====== ====== ====== =============================================== ============================== ================== 35 47 99.7 30 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGATTGGTTTATCCAGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGAGTTTCCACCTTTATTCCTGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGTAAGAAACCACAAAAACCAAATGCACCTGGAGCACAATTAGAACTCTTTTAACCCTTCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACACTGATATTCATTACTTTAAGCCATTTGA # Right flank : TAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGGGCAAGAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCACTTTTGCAGAGCGAAAAGATGATGATGGAATGAAAAATATAACCCATATGCGAACAAAAGTGTTCGTTTTGCAACATAAAAGGTATGGTTTCGTTGCACAACACTACCCTATAAACTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGGCGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAGTTCCGAAGTTGAGGCTCTGAATTTTAACAAATTCGGAGTCGTTTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 151562-152053 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014598.1 Prevotella intermedia strain OMA14 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 151562 30 100.0 36 .............................. CACCAGACATATGATGTTTTTCCAAGAACAAGTTGT 151628 30 100.0 36 .............................. TGAACTGTAGACTTTCATCGCCTACGAGCAAGTTGT 151694 30 100.0 36 .............................. TCAACACGGCGCATCTTGTAGACGTTTGAAAGTTGC 151760 30 100.0 36 .............................. CTTGATATATCGCACGATGTTTGAATTTCGAGTTGC 151826 30 100.0 36 .............................. CTCACACATTGGGGAAGAGTTCTTTTTCGGAGTTGC 151892 30 100.0 36 .............................. CCCGTGGTATGGTATCCACTTTGTCCATTGCGTTGC 151958 30 96.7 36 .......................C...... CTTTTATCGGGTATTCTGGAGCTTAAACTTTGTTGC 152024 30 90.0 0 .............A.......C.C...... | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.3 36 ATCTGCCTGCTGTTTGCAAGGTAAAAACAA # Left flank : AATATTGAGCGTGCAAAGTATGAAGCCATACTAAATGCGCACCAAAGCATTTATAAATTGCTTAGGTATATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGTGGCAGAGAGAAAACTTATTACTTCAAACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAAATATACAACAAGGGCAATGGCATCTATCTATCAAAAGAGGTTATGTCGCTGATATTTAAATATAGAACTCTTGTTCATAAACTTTTGCTTGCTAAAAAGAACAACCCCGATGAGAAGATAATGATAGATAAACGAAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGAAAAGAAAGCAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGCGGTTGC # Right flank : ACTTATTAACAAGCAAGGGAAGGGAATTGGGGAAGTAAAAATGGAAGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACTATCTCGCTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGTGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAGGTGTAGAGGTTGTGGCGTGGGTTCGGGCATCAGCACGATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGATTAGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTATC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCTGCTGTTTGCAAGGTAAAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //