Array 1 162755-160790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERL010000002.1 Salmonella sp. 32082101-2017-00322-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162754 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162693 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162632 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162571 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162510 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162449 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162388 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162326 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162265 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162204 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162143 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162082 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162021 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161960 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161899 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161838 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161777 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161716 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161655 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161594 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161533 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161471 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161368 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161307 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161246 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161185 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161124 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161063 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161002 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160941 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160880 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160819 29 96.6 0 A............................ | A [160792] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180379-178886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERL010000002.1 Salmonella sp. 32082101-2017-00322-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180378 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180317 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180256 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180195 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180134 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180073 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180012 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179951 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179890 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179829 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179768 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179707 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179646 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179585 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179524 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179463 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179401 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179340 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179279 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179218 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179157 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179096 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179035 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178974 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178913 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //