Array 1 108339-109086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMH010000003.1 Vibrio metschnikovii strain M9D Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 108339 28 100.0 32 ............................ GCGGGACATTCTTGGCTTGATGGGCCTCTGGC 108399 28 100.0 32 ............................ TTTCATAAAGACCTGCATAAAATTATTAAGCT 108459 28 100.0 32 ............................ ATGTAAAATAATTGGAATGTAGGCCAGTAAAG 108519 28 100.0 32 ............................ TTGCATCGCCCCCTCCCAACCGTAGTGAGCTA 108579 28 100.0 32 ............................ TTACACTATAAAACTTGGAACTGCTGGCTTTT 108639 28 100.0 32 ............................ TAAAGCTACTTGTTTGAGAGGCCGCCCCAGAA 108699 28 100.0 32 ............................ AGTCCCCCAGTTGATATAACGCGGAACAGATT 108759 28 100.0 32 ............................ GACAATAAAAGTTACCAAAGCTTGAGTAATAA 108819 28 100.0 32 ............................ TTCGATGGTTATCTTTTCGTCAAGCATTTTCC 108879 28 100.0 32 ............................ AAACATTAATTCATTAAGCATCATATTTAAAT 108939 28 100.0 32 ............................ AAAACCTGAAAATCATGTATTGGCTTTTTCTT 108999 28 100.0 32 ............................ CATCGGCATAACTTCTACGGATGAATCTAGGA 109059 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : ACGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATTGGCCACAGATTACTGATACTTCGCATAGATTCCCGCCTACGCGGGAATGACGGTTTGGTTGTGGTTTTGGGAGCTGATCTCTATAGATCCCCGTCATGTTTTGCCTGCTACTGCTGTGAGGCAGGGAAATGAAGGCGTAGCGATCATCGAAAACTGATCCACTAAATACACTTAGTCAGCATAGATTCCCACCTTGAGGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAATACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3622-3889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMH010000031.1 Vibrio metschnikovii strain M9D Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3622 28 96.4 32 ...........................T TTGTTCTTTAATCAGATCAGCATTCAATTTGT 3682 28 96.4 32 ...........................T AATAGATGTAAAGCGCGTCCTAGTGATGTGTC 3742 28 100.0 32 ............................ AGAAGGTGGGTTGCCTTTTGATGATTCAACGG 3802 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 3861 28 89.3 0 ...T.......T.T.............. | A [3884] ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAGAGGGATTGGGGAGACTTTAAAATTTCGAAGCATCCAGATATCCATAAAGGTTTATTGGACTCTGAATACTACGTTTCTAAAGAGCTGTACGACAAGTTTAGAAATATTATCGTCGAGTTGAAGCGGCTTGAAGGTGAACTAAGTGCTTCAAAACGCTCAGACAAAGCTGAGAATTTGCTGAAACTCATAGAAGCGGTCAAGCTAGATGCTCGTCTTGACGAATAAATACATAACAAACAATTCAAGCAGACCCTCAACGCGTGGCATTTTCGTTTTGCGTTGAGTTTGGTGATTACGGCGTTGTGCGGAAAGTTGGTAGTAGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : ATTGGTGATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAAGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCCTTTCAAATAAAAAGGAACTTTCGATGTTTAAAATCGAGACTAAACGTCTGATTATTAGGGATATGACTCCGAACGATGAAGATGCTTTTGTTGCTATGTCTCAGGATGCCAAATATCAGCGTTTCTATGAAGAAAGCGATTGTGATCCTAATAAATACCGAGAGTTAACAAGCTTGTTTATCACTCAGGCTTTTGAGAAGCCAAGAAAATCATACCAATTAGCTGTCGAGTGTAAAGTGTCAGGTAAGTTCGTTGGGACTGTTTGTTTACGTCTAGAGGACAATCGACAGGCTTCGATGGGGTGTGCATTTTCCAGAATCTCTCAAGGTAATAAGTTAAGTCA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5133-4864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMH010000034.1 Vibrio metschnikovii strain M9D Scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5132 28 100.0 33 ............................ AGCGGTATAAGCTGGCTGACCGTCCTGAATCTT 5071 28 100.0 32 ............................ AAAGCTACTTGTTTGAAGTGGCCGCCCCAGAA 5011 28 100.0 32 ............................ TTAGTTGATCAGGCCGCGGGTATCTTCGGTAG 4951 28 100.0 32 ............................ TACCACACTAACTCTTGTAGAGTGCGCTGAAA 4891 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATGCGAGAGCGAGTAAAGCGTTACATTCTGCCAGAACGAAAAAAACGGCCCAAATCCAGGACCGTTCGTATGAGTAAAACTCGCTACCCTGTTCGCTCCAAACACGTTAAGTGATAGGAGTTAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCAT # Right flank : TATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGCAGCATTTTTGTAATGCGTTGATTTTTGTGTTTTACGGTGTTGTGCGGTGAGTTGGTCGTTGCGTTGCTCACCCCTTAAGCGGGCGTTAGCCGACTTCTACCACCTTACTCATCAGTAAGTGTATACTTAGCCAAGTTTTACTTACATTGAAGAAGATCACCATGACAGCATTGACAGATAACATGTGGAATATGAAACCAAATATACCGTTGGCTAAACAACTTGCCAAAAGAGATGTACCAGCTTTGGTTTATGACGCTGTTAACCTCGAGGGTGTTGCAATGACTTTACCTGAGGTGCAAACCATTCTTGATGGGATCACCGTAGGTGGTCATCGAATTAGTGATCAAAATATGGCAATGAACCAAGCTAGAGCATGGGAGTTTATTTTTGGCTTAGTTGATCAAGGTGAGTTCCAATTTAATAAAGAAACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1046-1613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMH010000052.1 Vibrio metschnikovii strain M9D Scaffold52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1046 28 100.0 32 ............................ AGTAACGCCCGTGTAGTGCTTGGCAATAAATG 1106 28 100.0 32 ............................ TCACAGTTTTGAAACATAGTTCTGCCGCGTCT 1166 28 100.0 32 ............................ TTCTGATATGTCCACTAATCCCGTTTCTCTTT 1226 28 100.0 32 ............................ ATCAAACCGTGCTGCTGCTCGTGCGTTGATTG 1286 28 100.0 32 ............................ ATACTCCTTCCTCTTTTCTGTTTGCCTGTTAT 1346 28 100.0 32 ............................ ATTAGCTCTCTGATTTCATCATCAAGTGATGA 1406 28 100.0 32 ............................ TGTAACAATTGAGCAAACAAAAGCTAAGATAA 1466 28 100.0 32 ............................ TTAAAATGATCTCCATGCTATCAGTAGACCAA 1526 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 1585 28 89.3 0 ...T.......T.T.............. | A [1608] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTCCGGCTTTGCTCTGATAAATTGTGTTCGTAAAAGGTTCGATTGTTGCTGAAAGGTCTCTTCCTTTGGTGTTGTTGACCCCTTGATTCCGTAAGCTAATTCGCTTCAACCTATTTGGGATCTTATCGGCAACAATACTTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTATTCGTAAGCAATAAATGTTGAAAAAGTTCAATTTAATCAATAAGTAATAAAGCATAACAAACGCTTCAAGAGGGACTTCCAACGCGTGGCATTTTTATTATGCGTTGATTCCGGTGGTTTCAGTGTTATGCGGAGGCTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATTGTTCACTGCCGCATAGGCAGCTTAGAAATTGAGCTGCAAATAACTCATTAGGCTCAAGCAGTTCACTGCCGCATAGGCAGCTTAGAAATCTCTAAATTGAATCGAACATCCCGCCTCGTAGTTCACTGCCGCATAGGCAGCTTAGAAAAACCAAAGGTGCCGGCGCTACTTTTTGGCGCTGTTCACTGCCGCATAGGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1913-2300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMH010000052.1 Vibrio metschnikovii strain M9D Scaffold52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1913 28 100.0 32 ............................ TTGAGCTGCAAATAACTCATTAGGCTCAAGCA 1973 28 100.0 32 ............................ TCTCTAAATTGAATCGAACATCCCGCCTCGTA 2033 28 100.0 32 ............................ AACCAAAGGTGCCGGCGCTACTTTTTGGCGCT 2093 28 100.0 32 ............................ ATATCTAGCTAGAATATTACTTGATAAATAAT 2153 28 100.0 32 ............................ ATTCTGAGATTTGATCGCACGTTTTGGCAATC 2213 28 100.0 32 ............................ TCAGCGGGGACGGCTCTTTCTCCATAGTTGTC 2273 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCGCACAGGCAGCTTAGAAATGTAACAATTGAGCAAACAAAAGCTAAGATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTAAAATGATCTCCATGCTATCAGTAGACCAAGTTCACTGCCGCACAGGCAGCTTAGAAACAAACTCGCTCTAATCCAAATCAAGCAACCAGTTTACTGCCGTATAGGCAGCTTAAGAAATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATT # Right flank : TGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGTACTCATATGTATTGGAGTTTGAGTGGAAATAGAATTTTATGAAGCAACTGAAATCGAATTAGCTTCAGAGTTAACACGACTAAATATGCACACGTATTATTTGGCTAGAAATCTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //