Array 1 51160-51393 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386927.1 Azospirillum halopraeferens DSM 3675 G472DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51160 36 100.0 30 .................................... CTCAAGCACCTCCCGCGTCGGGCGATGCGG 51226 36 97.2 30 .........A.......................... ATGGCGGAGGTGAAGAGGGACGCCCTGATC 51292 36 100.0 30 .................................... CGGATCGGCACCTGGAACCAATGCGGGATG 51358 36 86.1 0 .....................A...T...GT..G.. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 AGTGTAGCCGATGGGAAACCGGGGTCCAGCCGCAAC # Left flank : GGGTGCAGGGCCTGTCCGAGTGTAGCCGATGGGAAACCGGGGTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCCGCATCATGCCGGCAGGGCGTTGCCGCGCGCATTCCTTAACCCACTCCCCCGCACCGGGCCCCCACCCGACCCTCCCCCATCTTCGACGGGGGAGGGCTCTTTCGGTCCTTGCCGGTCGCAGGGAAACAACCCCCGCCCTACGCCGCGAACAGGCGCAGGGCGCGGGGGCGGATGGCGACGGGGGTGCCGGGGGTCAGGCGCAGGGCGTCGGCCTCGGCGCGGGACACCTCGGCCTCCAGAACGGCGCCGTCGGGGCGGCGGGACAGTTCCACGCGCACCTGGCCGCCGCGCGCCGTGAGATGGCGCACCACCGCCAAAGCCGCCGCCTCGGGGGCGCGGGACTCGGGCAGCAGTTCCAGCTCGTGGGCGCGCACATAGGCGACCGCGGCGGCCGACGCGCCGGCAGGCGCAGGGGTGTCCGCCGCCGCCGGGGCGACGCGGGCCAAGGGGGCGCTCCAGCCGCCCGCCGCCACCTCGCGGCCGTCGATGCGGCAGTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCCGATGGGAAACCGGGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 86930-86427 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386929.1 Azospirillum halopraeferens DSM 3675 G472DRAFT_scaffold00016.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 86929 32 100.0 35 ................................ CCGTTGACGTAGTAGTCGATGCCGTTGTGCGTGAC 86862 32 100.0 36 ................................ CCGAGGGCCTGTGCAGTCGGCGGCGGGGTGACGGAG 86794 32 100.0 35 ................................ GCCGAGAAGCGGGTCGTCCACCTCCAGCCATTCCG 86727 32 100.0 36 ................................ CACCGAGGGCGTTCCGAGATGAGTAACCCCAAGCAG 86659 32 100.0 33 ................................ GGAGGAGGAGAGGGAGGGAGGAGGAGGGAGGAG 86594 32 100.0 37 ................................ CGTAGGAGCCGGTCAGCACGTACCAAGGGACCGAGCG 86525 32 100.0 35 ................................ CCACAGCTCTTGCGGAGTGCGGGCGATCTCGAACG 86458 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGGGTTGAAAC # Left flank : CGGCTTTTCCGGTGGCAACCAGCAGAAGCTGGTGCTGGCCCGCGAGATCGAGCGCAACCCCGACCTGCTGCTGGTCGGCCAGCCCACCCGGGGCGTCGACATCGGGGCCATCGCGTTCATCCACAAACGCCTGCTGGCCCTGCGCGATGCCGGCAAGGCGATCCTTCTGGTGTCGGCGGAGCTGGAGGAGATCCTGACGCTGGCCGACCGCATCCTGGTGATGGTCGACGGCCGCATCGCCGGCGAGGTGGCCCCGGCCGACGCCGACGAGCGCCGGCTGGGCCTGATGATGGCGGGCGCGGGATAGGGCAGGCCGCCATCCGCGCGAACCCCGAGCACCCGCCGAATCCCCGGCCGGTTCGCGTACGCCTCAACCCCTTGGATGGCAACTCTTTTCTCCGACGCCCGACCACGCTACCCTGGTCCCCGCCGCCGCGGCCCCGGAGGTTCGCGCAACGGCCGCACTTTCGGGTTCTTGGACAAGTGCATAGAATGAGGGA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCGTGCGGGAGCGTGGGTTGAAACCACAGCACGGCTCCCGGCGCTCCGCTTGCGCTGGTGTCGCTCCCCGTGCGGGAGCGTGGGTTGAAACCGCCTGTTCGTCACCAACCCCGATCTGCTGCGGCAGTCGCTCCCCCTGCGAGAGCGAGAGGGCGGTTGCGTGCGTCTGCCGATGCGCCGTTCCGGAGGCTCCGGTGTCGTGCCGGGGTACCTCCGGCCTCCGGCCGGGTCGCCTCCTCCGGCGTCCCCCCTGAAGCCGCGCTTGCGCCGGACCCGGTGGCCGGGGCACTGTCGGGGCGGGGGATGTGCGGGCGGGGTGGGCTGATGGCGGGCGGGGGAGACGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64914-66648 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386930.1 Azospirillum halopraeferens DSM 3675 G472DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64914 29 100.0 32 ............................. CCGGACGTCTGGGGCCGCGACCGCATCGCCCG 64975 29 100.0 32 ............................. CCGTGGGACATGGTCGTCGAGCACAGCAACAT 65036 29 100.0 32 ............................. CCGTCTTCTGCGCCTTCTTCTTCAGTGCCGCC 65097 29 100.0 32 ............................. TGGTGGTGACCAGCGTCCCGTTCTCGACGCAG 65158 29 100.0 32 ............................. CCGCGGCCGCGGACCCTGACGGTGTTCTTCGC 65219 29 100.0 32 ............................. TGGAAAACGAGCACGTTGTGCTGCACCGGCTG 65280 29 100.0 32 ............................. CGGCCTACTTCCTCGACGGGGTGAAGTACGTG 65341 29 100.0 32 ............................. TACGCCGACGGCTCGGTGCAGCCGCTGCTGGT 65402 29 100.0 32 ............................. GAGAACGAGGCTGCCAAGAAGTCGCGCGCCGC 65463 29 100.0 32 ............................. GACAGGGCGCTTGCTCTATTCGGGTGATCGCA 65524 29 100.0 32 ............................. CAAAGAGAGATCGTGCGGGCGCTGCGTCAGTC 65585 29 96.6 32 ..................A.......... CAAGACGTCGTGGTCCAAGCGCAGATGGGGAC 65646 29 100.0 32 ............................. TTGGAGGGCAAAGAAGCGTCCATCCTTGATGC 65707 29 100.0 32 ............................. TCTGCCGAGCAGTATGCGGCCATCCTGGCGGA 65768 29 96.6 32 ............................G AAGCCGCTGGCCGAGTCCCGGACGGTCAAGGG 65829 29 100.0 32 ............................. ATGCGATACCCCCATCCGGCCAGCCGGTGTTG 65890 29 100.0 32 ............................. CCAGCCGCCGGCTTTGTGGCGTCGATGTTGCT 65951 29 100.0 32 ............................. ATGCGATACCCCCATCCGGCCAGCCGGTGTTG 66012 29 100.0 32 ............................. CCAGCCGCCGGCTTTGTGGCGTCGATGTTGCT 66073 29 100.0 32 ............................. TCTGCCGAGCAGTATGCCGCCATCCTGGGGGA 66134 29 100.0 32 ............................. CGCCAGGCGCCCCGCCGCCGCGCGGCCGTAGA 66195 29 100.0 32 ............................. AAGTCCCTGGAAGGCTTCGACTGGGCATGGGT 66256 29 100.0 32 ............................. CATTGATGTCTCCAGATCGTGGCCAGACAGCC 66317 29 100.0 32 ............................. GCCACCTGGGCTTGGTGGCAACGAGACAGTCC 66378 29 100.0 32 ............................. TTCGGGGCGCGCGTCGCGCGCGAACATGGTAT 66439 29 100.0 32 ............................. TAGGACGCACTGGCGAAGGTCATCGGGGCGCG 66500 29 100.0 32 ............................. ATGACGACACCACCTCGATCTGCACCGCCCAG 66561 28 82.8 31 ...............-.G.....A...TG CGGAGGCGATGGCGCGGCCGATGTGGCTGGT C [66573] 66621 28 72.4 0 ........C...C..T..A..-.C..G.A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.2 32 GTTGCCCCTGCATCCGCAGGGATGAACCC # Left flank : GACGGTGCCCCTGGCCTTCCGCTGCGCCAAGCGGATCGAGCAGGGCGCGGCGGACGGCCTGGACCGCCTCTGCCGCCGGGCCGTCTCGCGCCATGTCCGGGACACCCGCTTCATCGATACGGTCATCGACGACATCAAGGAGTTGCTGGCCTCATGATCGTGATCTGCCTGTCCGATACCGCCGACCGCTTCCACGGCTTCCTGCGCTCCGTCATGATGAACGTGCACCCCGGCGTGTACGTCAGCATGGATCTGGACGCCGGTTCGCGGGATCGCATCTGGACCATTCTTGAACGCTGGTGGGAGGCCGAACCGCAGGGCATGGCGGTCATGATCCACCGGGACAAGGACAAACCCATGGGCATGGACTTCCGCTCACTCGGCGCACCCAAACGAACCATTGTCGAATACGAGGACCATTATGCTCTGCATCGAAAAACCACAGAAACGTCCTAGACTTTCCGGAAAATATCGTGTTTCATGAAAGGCTTGGAAGCACG # Right flank : ACCTCGCCCCGGCTCCCCGGGATTGCCCGGCTGGCCCGGTCCGGCATAAAAGGGGCGGGCCGGTTGGGGGCCGGGGGCGAAGCCGGTGCGGGGCTGCGGACCGTGATCGATTGCCGTGTGCCGGATACCGCCCGGGCGCGCTTGGACTGGACGCGGCTTGTGATAGGACCCGCCATGGATTGGGCTGCCGGTTACGTCGTAGACACCCTGTGCTCGCCCGGGTTCTACCGGGAGATGGCGCCGGCCTATGCCGGGTTCGCGGCGCTGCTGGCGGGGCGGCCGCCGGCGTTCGGGGAAGAGGGGCCGCGCGCGGCGCTGGAGCTGGGGTGCGGGGTCGGCTTCGGCACCGCCCTGCTGGCCGCCGCCAACCCCGACGGCGCCTGGACCGGCATCGACTTCAACCCCGACCACATCGCCGCCGCCGAGGCGTTCCGCGCTGCCGCCGGCCTGACCAACCTGACCTATCGCGACGCCGCCTTCGCCGACTACCGGCCGGACCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCCCTGCATCCGCAGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 106454-107087 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCF01000021.1 Azospirillum halopraeferens DSM 3675 G472DRAFT_scaffold00018.18_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 106454 32 100.0 36 ................................ GCCGGCGGAGTGCAGGCCACCGCCCAGCACGGTGCC 106522 32 100.0 34 ................................ GCACCATCGATCACACCGATCCATCCGAAAGGGA 106588 32 100.0 36 ................................ CACTGGAATTTGCGCTTGCATAGCGCATGCGTATTC 106656 32 96.9 36 ......................T......... CGGCGCTATTGGGCGGGCGGCGTGGTGTTCCTGGAC 106724 32 96.9 34 ......................T......... GGTAATCGGCCCCGGCCTTGCGCAGCGCGCGTCG 106790 32 96.9 35 ......................T......... CCGGCGCCGGACGCCCCGCCAACGCCGCCACACGC 106857 32 96.9 35 ......................T......... TCGAGCATGGACTCAAGGTGCTGACCGATGCCGGC 106924 32 100.0 34 ................................ CCTCCGCGCGCACCTCCGCCGATCTGAACTACAG 106990 32 100.0 34 ................................ AGATGACCGACGCGCTGCCCGGCTGGAGGTCGCC 107056 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 98.8 35 GTTTCAACCCACACCCCCGCGCGGGGGGTGAC # Left flank : GTTTACCCCAGCTGCCATACCGCAGGTAATTCGGTCATTTCTGGACACGCTAGAACTTGTTAGGCGCGAGTCGGCAGGGTATAATTCCGAGTCGCCACCCCAGCAGCGCGAGGAACCAGTGCGCGCCGAACCTGTTCAGCCCAGCATGGCGCCCCAACCGATGTACTCCCCGCCGCCGCCAGCAGGCCCAGCGGCGGATCTTGAACTCAACGAGCCGAACCTGAGCATCCGCGGCGGACAGGTTCGGATCGAAGCTTTGCTGGATTTCGATGGCCTCACGCAGCTTGAAGAGCAGATCAAGGCACTTAAGCTGCTGATGAAGCCGAAGGCGTCCACTCGCCCAACGCCTCCCTCCGAGCCGAACTAGCGCCGCTGGGGCGAGGCGCTATGCTCCACCTATTCCATTGCGCAAGCCCCGGCCTGTTGACCGGGGCTTCGCCATTTCTGGAGGGGCGGCTTGGTGGCGTTTGCGCCATAATACCGTTGTTGAAGCCCATGTC # Right flank : CTGCCTCACTCTATCCACTTGTCCAAGAAGCCGAAAGGGGGCCGGTTGCGCGAACCTCGCCGCGGCGGACGCCGCGGGGTGGGGCGGCGGCGGTGGCTCGGCATGAGAATGGTGATCTTACAACGGGTTGCGGGGTGCGCGAAAGGGGCGGGGTTTTGGCGTGTGCCGGGGGTTCGCGCACACCTCAGAAGACCAGGGGGCCGTTCAGGTCCAGGGCCGGCTTGGCGCCCACATGCTCGATGCGGCGTTGGGCGTCGGCGCCGAGGTGGTAGAAGCGCAGGCTGTCGGTGGCCGGGTCGATCTCGGCGATCAGGCGGGCGCGCAGGGCGGTCCATTGGGCGGGGTCGACCTCGCATTCGAACACCGAAAGCTGCACGCGCTGGCCGACGTCCCGGCACGCCTTGGCCACGCGGCGCAGACGGCGGCGGCCGGCGGTGGTTTCGGTGCTCACGTCGTAGGTGATCAGCATCAGCATGGGCGGTGCTCATTTCCACACGAAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACCCACACCCCCGCGCGGGGGGTGAC # Alternate repeat : GTTTCAACCCACACCCCCGCGCTGGGGGTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //