Array 1 32094-31040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXX010000002.1 Phocaeicola dorei strain D31t1_170403_C3 NODE_2_length_645609_cov_31.109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================== ================== 32093 47 95.8 29 ...A............................-............... GATTTAAAACCTTAACACCACCAATCATA 32017 47 97.9 30 ................................-............... CATCTATTAGTACAATGGCGGTAGTTATAA 31940 47 97.9 29 ................................-............... TCCCCATTTCCAGTGGGGCGAATGTCTTG 31864 48 100.0 29 ................................................ CTTCTGATTGGTTTACTCGTACTGTTCCG 31787 48 100.0 30 ................................................ CTTCTAATGCAGGTAAGGCTGCCATTACTA 31709 48 100.0 30 ................................................ TGTGAAGGGTACATACCGCTTTCGAAAAGA 31631 48 100.0 30 ................................................ GCTGAGGACGAACTTTGAATGTACGATACG 31553 48 100.0 30 ................................................ AATGGTTTTATGCACATTTCCTTTGGTTCT 31475 48 100.0 30 ................................................ AGCATCAGCTGTACCAGCAGCTATCTTATT 31397 48 100.0 30 ................................................ TCGCCATTTCGCATCCCTCGGCTGGTACAT 31319 48 100.0 29 ................................................ AAAATCCAAGAGACGCTCTTTGCCGGGGT 31242 48 100.0 30 ................................................ GGGCAAAGGAAAACATTATTTTCGAATAAA 31164 48 100.0 29 ................................................ AATTAATTAATTTAAATTAGACCATACGG 31087 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ ============================== ================== 14 48 99.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 13546-13049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXX010000026.1 Phocaeicola dorei strain D31t1_170403_C3 NODE_26_length_17907_cov_37.4212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 13545 33 100.0 33 ................................. TTGTAAGTTGCTTGATATGCTTGGCTATGGTTC 13479 33 97.0 33 T................................ GAACATTGTTGGTTTGTTACGCTAACCTATGAT 13413 33 100.0 31 ................................. CTCTATTATCATTTTTTTTAAGGTTAGGAAA 13349 33 100.0 34 ................................. GCCATGATATTTACTATATTTGTTTCTTCCTGGC 13282 33 100.0 33 ................................. ACCCACATGTGATTGTTTTCAAAACCATAGTCA 13216 33 100.0 34 ................................. CTCCAGTACCATGTTATGTACCTAAGGTATAGGA 13149 33 97.0 33 T................................ ATCAATGGCCCAGTATTCGGCAATATCGAAGAT 13083 33 81.8 0 G..........G.......A.A.......G.G. | AA [13064] ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.0 33 AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Left flank : GATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAG # Right flank : ATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Alternate repeat : TGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.80,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //